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BaseInfo

ncRNA ID	osa-miRf11917-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	25
Mature sequence(if miRNA)	NA - GAGCUGCUCGAGCUCGGCUCGUCUC - NA
Stem-loop(if miRNA)	CU       C        U UC  A    AUU       -------      -----A    U AGGCUCGUGAG  GCUCGAG UCGGCUCG C  AC CUCG   CGAGCUU       GGCUCG      GCUC U |||||||||||  ||||||| |||||||| |  || ||||   |||||||       ||||||      |||| G UCCGAGCACUC  CGAGCUC AGCCGAGC G  UG GAGC   GCUCGAA       CCGAGU      CGAG A            UU       C        U UU  -    ---       CAUCGAU      CCAAAC    U
Stem-loop sequence	AGGCUCGUGAGCUGCUCGAGCUCGGCUCGUCUCACACUCGAUUCGAGCUUGGCUCGAGCUCUUGAUGAGCCAAACCUGAGCCUAGCUACAAGCUCGCGAGGUUUGUCGAGCCGACCUCGAGCUUCUCACGAGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015783821.1	ncRNA:25   CUCUGCUC-GGCUCGAGCUCGUCGAG   1   *=|=||||-||||||||||||||||| targets:122   CGGGCGAGGCCGAGCUCGAGCAGCUC   147 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107276174 (LOC107276174), mRNA	uncharacterized LOC107276174(LOC107276174)	coding protein	psRNATarget
XM_015769529.1	ncRNA:25   CUCUGCUCGGCUCGAGCUCGUCGAG   1   |=||*||*|||||*||||||||||| targets:567   GGGAAGAACCGAGAUCGAGCAGCUC   591 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable serine/threonine-protein kinase At1g09600 (LOC107278170), mRNA	probable serine/threonine-protein kinase At1g09600(LOC107278170)	coding protein	psRNATarget
XM_015784741.1	ncRNA:25   CUC-UGCUCGGCUCGAGCUCGUCGAG   1   |=|-=||*||||||||||||*||||| targets:628   GGGUGCGCGCCGAGCUCGAGAAGCUC   653 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group chaperone protein ClpB1 (LOC4339343), mRNA	chaperone protein ClpB1(LOC4339343)	coding protein	psRNATarget
AK105433.1	ncRNA:25   CUC-UGCUCGGCUCGAGCUCGUCGAG   1   |=|-=||*||||||||||||*||||| targets:602   GGGUGCGCGCCGAGCUCGAGAAGCUC   627 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-124-F05, full insert sequence	NA	coding protein	psRNATarget
AF332981.1	ncRNA:25   CUC-UGCUCGGCUCGAGCUCGUCGAG   1   |=|-=||*||||||||||||*||||| targets:547   GGGUGCGCGCCGAGCUCGAGAAGCUC   572 Target Full Sequence	2.5	Oryza sativa heat shock protein (HSP101) mRNA, complete cds	NA	coding protein	psRNATarget
AK100903.1	ncRNA:25   CUC-UGCUCGGCUCGAGCUCGUCGAG   1   |=|-=||*||||||||||||*||||| targets:549   GGGUGCGCGCCGAGCUCGAGAAGCUC   574 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023131M05, full insert sequence	NA	coding protein	psRNATarget
AK110090.1	ncRNA:25   CUCUGCUCGGCUCGAGCUCGUCGAG   1   *|*||*||=||*||||||||||||| targets:268   UACACCAGUCGCGCUCGAGCAGCUC   292 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-160-G09, full insert sequence	NA	coding protein	psRNATarget