Search result

BaseInfo

ncRNA ID	osa-miRf11899-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	21
Mature sequence(if miRNA)	NA - UCAGCGCCAUGGACAUUGGCG - NA
Stem-loop(if miRNA)	G     -         UGG           ---AA    UAACGUAUCAGCGCCAACGUCGUUGGCGCUAA GUC UGGAC UCAGCGCCA   ACAUUGGCGCU     GCUA                                A ||| ||||| |||||||||   |||||||||||     ||||                                C CAG ACCUG AGUCGCGGU   UGUAACCGCGA     GACU                                U    -     G         UUA           CUCUA    ACUGAGUCGCUUAAGUACGGUGGAGCCUAAUC
Stem-loop sequence	GUCGUGGACUCAGCGCCAUGGACAUUGGCGCUAAGCUAUAACGUAUCAGCGCCAACGUCGUUGGCGCUAAACUCUAAUCCGAGGUGGCAUGAAUUCGCUGAGUCAUCAGAUCUCAGCGCCAAUGUAUUUGGCGCUGAGGUCCAGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK065885.1	ncRNA:21   GCGGU---UACAGGUACCGCGACU   1   |||||---|||||||||||||||| targets:2164   CGCCAUCCAUGUCCAUGGCGCUGA   2187 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013045A06, full insert sequence	NA	coding protein	psRNATarget
XM_015770030.1	ncRNA:21   GCGGU---UACAGGUACCGCGACU   1   |||||---|||||||||||||||| targets:167   CGCCAUCCAUGUCCAUGGCGCUGA   190 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107275285 (LOC107275285), transcript variant X1, mRNA	uncharacterized LOC107275285(LOC107275285)	coding protein	psRNATarget
XM_015770031.1	ncRNA:21   GCGGU---UACAGGUACCGCGACU   1   |||||---|||||||||||||||| targets:119   CGCCAUCCAUGUCCAUGGCGCUGA   142 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107275285 (LOC107275285), transcript variant X2, mRNA	uncharacterized LOC107275285(LOC107275285)	coding protein	psRNATarget
HI404083.1	ncRNA:21   GCGGUUACAGGUACCGCGACU   1   ||||||*|||*|||||||||| targets:131   CGCCAAAGUCAAUGGCGCUGA   151 Target Full Sequence	2.5	Sequence 2208 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236213.1	ncRNA:21   GCGGUUACAGGUACCGCGACU   1   ||||||*|||*|||||||||| targets:131   CGCCAAAGUCAAUGGCGCUGA   151 Target Full Sequence	2.5	Sequence 2208 from Patent EP2985353	NA	coding protein	psRNATarget
JB164544.1	ncRNA:21   GCGGUUACAGGUACCGCGACU   1   ||||||*|||*|||||||||| targets:131   CGCCAAAGUCAAUGGCGCUGA   151 Target Full Sequence	2.5	Sequence 2208 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015762048.1	ncRNA:21   GCGGUUACAGGUACCGCGACU   1   **||||||||||||*|||||* targets:2635   AUCCAAUGUCCAUGUCGCUGC   2655 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transport inhibitor response 1-like protein Os11g0515500 (LOC4350590), mRNA	transport inhibitor response 1-like protein Os11g0515500(LOC4350590)	coding protein	psRNATarget
AK072358.1	ncRNA:21   GCGGUUACAGGUACCGCGACU   1   **||||||||||||*|||||* targets:2540   AUCCAAUGUCCAUGUCGCUGC   2560 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023056H23, full insert sequence	NA	coding protein	psRNATarget
AY323478.1	ncRNA:21   GCGGUUACAGGUACCGCGACU   1   =|||**||||||||||||||* targets:869   UGCCCCUGUCCAUGGCGCUGC   889 Target Full Sequence	3.0	Oryza sativa (japonica cultivar-group) ap2 domain containing protein (cap2) mRNA, complete cds	NA	coding protein	psRNATarget
AJ304840.1	ncRNA:21   GCGGUUACAGGUACCGCGACU   1   =|||**||||||||||||||* targets:837   UGCCCCUGUCCAUGGCGCUGC   857 Target Full Sequence	3.0	Oryza sativa mRNA for ethylene responsive protein (ebp-89 gene)	NA	coding protein	psRNATarget
XM_015776789.1	ncRNA:21   GCGGUUACAGGUACCGCGACU   1   =|||**||||||||||||||* targets:903   UGCCCCUGUCCAUGGCGCUGC   923 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor RAP2-12 (LOC4331843), mRNA	ethylene-responsive transcription factor RAP2-12(LOC4331843)	coding protein	psRNATarget
CT832042.1	ncRNA:21   GCGGUUACAGGUACCGCGACU   1   =|||**||||||||||||||* targets:858   UGCCCCUGUCCAUGGCGCUGC   878 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103E02, full insert sequence	NA	coding protein	psRNATarget
AK073133.1	ncRNA:21   GCGGUUACAGGUACCGCGACU   1   =|||**||||||||||||||* targets:843   UGCCCCUGUCCAUGGCGCUGC   863 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J033023E13, full insert sequence	NA	coding protein	psRNATarget