Search result

BaseInfo

ncRNA ID	osa-miRf11893-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	24
Mature sequence(if miRNA)	NA - AUUCAAACAUCCGAUGUGAUAGGG - NA
Stem-loop(if miRNA)	GA  UAAAA    U  UC UAUAAUUAAUAUUCAAACAUCCGAUGUGAUAGG  CU     GUUU AG  C |||||||||||||||||||||||||||||||||  ||     |||| || AUAUUAAUUAUAAGUUUGUAGGCUACACUAUCC  GA     CAAA UC  C                                  GG  -----    -  UA
Stem-loop sequence	UAUAAUUAAUAUUCAAACAUCCGAUGUGAUAGGGACUUAAAAGUUUUAGUCCCAUCUAAACAGGGCCUAUCACAUCGGAUGUUUGAAUAUUAAUUAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK064790.1	ncRNA:24   GGGAUAGUGUAGCCUACAAACUUA   1   |||||||||||||||||||||||* targets:2253   CCCUAUCACAUCGGAUGUUUGAAA   2276 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013000C06, full insert sequence	NA	coding protein	psRNATarget
XM_015777574.1	ncRNA:24   GGGAUAGUGUAGCCUACAAACUUA   1   |||||||||||||||||||||||* targets:2268   CCCUAUCACAUCGGAUGUUUGAAA   2291 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4334447 (LOC4334447), mRNA	uncharacterized LOC4334447(LOC4334447)	coding protein	psRNATarget
AK288638.1	ncRNA:24   GGGAUAGUGUAGCCUACAAACUUA   1   |||||||||||||||||||||||* targets:212   CCCUAUCACAUCGGAUGUUUGAAA   235 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090055N09, full insert sequence	NA	coding protein	psRNATarget
CT834429.1	ncRNA:24   GGGAUAGUGUAGCCUACAAACUUA   1   |||||||||||||||||||||||* targets:1275   CCCUAUCACAUCGGAUGUUUGAAA   1298 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA203L19, full insert sequence	NA	coding protein	psRNATarget
AK100874.1	ncRNA:24   GGGAUAGUGUAGCCUACAAACUUA   1   ||||||=||||||||||||||=|| targets:930   CCCUAUUACAUCGGAUGUUUGGAU   953 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023126D22, full insert sequence	NA	coding protein	psRNATarget
AK101454.1	ncRNA:24   GGGAUAGUGUAGCCUACAAACUUA   1   ||||||||=||||||||||||||* targets:995   CCCUAUCAUAUCGGAUGUUUGAAA   1018 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033040A11, full insert sequence	NA	coding protein	psRNATarget
XM_015766175.1	ncRNA:24   GGGAUAGUGUAGCCUACAAACUUA   1   ||||||||=||||||||||||||* targets:989   CCCUAUCAUAUCGGAUGUUUGAAA   1012 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group putative methyltransferase DDB_G0268948 (LOC4325584), mRNA	putative methyltransferase DDB_G0268948(LOC4325584)	coding protein	psRNATarget
XM_015786980.1	ncRNA:24   GGGAUAGUGUAGCCUACAAACUUA   1   *|||||||=||||||||||||=|| targets:552   ACCUAUCAUAUCGGAUGUUUGGAU   575 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4341373 (LOC4341373), transcript variant X2, mRNA	uncharacterized LOC4341373(LOC4341373)	coding protein	psRNATarget
XM_015786979.1	ncRNA:24   GGGAUAGUGUAGCCUACAAACUUA   1   *|||||||=||||||||||||=|| targets:602   ACCUAUCAUAUCGGAUGUUUGGAU   625 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4341373 (LOC4341373), transcript variant X1, mRNA	uncharacterized LOC4341373(LOC4341373)	coding protein	psRNATarget
LQ236362.1	ncRNA:24   GGGAUAGUGUAGCCUACAAACUUA   1   ||||=|=|=||||||||||||||* targets:6   CCCUGUUAUAUCGGAUGUUUGAAC   29 Target Full Sequence	3.0	Sequence 2357 from Patent EP2985353	NA	coding protein	psRNATarget
HI404232.1	ncRNA:24   GGGAUAGUGUAGCCUACAAACUUA   1   ||||=|=|=||||||||||||||* targets:6   CCCUGUUAUAUCGGAUGUUUGAAC   29 Target Full Sequence	3.0	Sequence 2357 from Patent EP2074227	NA	coding protein	psRNATarget
JB164693.1	ncRNA:24   GGGAUAGUGUAGCCUACAAACUUA   1   ||||=|=|=||||||||||||||* targets:6   CCCUGUUAUAUCGGAUGUUUGAAC   29 Target Full Sequence	3.0	Sequence 2357 from Patent EP2559767	NA	coding protein	psRNATarget
CT837623.1	ncRNA:24   GGGAUAGUGUAGCCUACAAACUUA   1   |||||||||||||||||*|||||* targets:489   CCCUAUCACAUCGGAUGCUUGAAA   512 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN019I07, full insert sequence	NA	coding protein	psRNATarget
AK103177.1	ncRNA:24   GGG-AUAGUGUAGCCUACAAACUUA   1   |||-|=||||||||||||||||=|* targets:1147   CCCAUGUCACAUCGGAUGUUUGGAC   1171 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033121H17, full insert sequence	NA	coding protein	psRNATarget
XM_015788312.1	ncRNA:24   GGG-AUAGUGUAGCCUACAAACUUA   1   |||-|=||||||||||||||||=|* targets:1503   CCCAUGUCACAUCGGAUGUUUGGAC   1527 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group serine/arginine-rich splicing factor SR45a (LOC4342102), transcript variant X1, mRNA	serine/arginine-rich splicing factor SR45a(LOC4342102)	coding protein	psRNATarget
AK073850.1	ncRNA:24   GGG-AUAGUGUAGCCUACAAACUUA   1   |||-|=||||||||||||||||=|* targets:1486   CCCAUGUCACAUCGGAUGUUUGGAC   1510 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033073F11, full insert sequence	NA	coding protein	psRNATarget
XM_015781196.1	ncRNA:24   GGGAUAGUGUAGCCUACAAACUUA   1   |=*|=|||||||||||||||||** targets:1983   CUAUGUCACAUCGGAUGUUUGACG   2006 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group GATA transcription factor 6 (LOC4336532), mRNA	GATA transcription factor 6(LOC4336532)	coding protein	psRNATarget