Search result

BaseInfo

ncRNA ID	osa-miRf11885-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - GUGGCAGUCCAGUCAGCAUA - NA
Stem-loop(if miRNA)	U   A    C         C         -    A   ---AAAAAU        --ACU   CAGUU   CUUC  GGC CACA GUGGCAGUC AGUCAGCAU AAAA AUA         GGUAGGGC     UGU     CUG    U  ||| |||| ||||||||| ||||||||| |||| |||         ||||||||     |||     |||  CCG GUGU CAUCGUCAG UCAGUCGUA UUUU UAU         CCAUCUCG     ACA     GGC    U A   C    A         A         A    A   AUAUAUAUU        GGCGU   CCACU   UCUU
Stem-loop sequence	UGGCACACACGUGGCAGUCCAGUCAGCAUAAAAAAUAAAAAAUGGUAGGGCACUUGUCAGUUCUGCUUCUUUUCUCGGUCACCACAUGCGGGCUCUACCUUAUAUAUAUAUAUUUUAAUGCUGACUAGACUGCUACAUGUGCGCCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015755484.1	ncRNA:20   AUACGACUGACCUGACGGUG   1   *||||||||||||||||||| targets:3   AAUGCUGACUGGACUGCCAC   22 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group protein SAR DEFICIENT 1 (LOC4346682), transcript variant X3, mRNA	protein SAR DEFICIENT 1(LOC4346682)	coding protein	psRNATarget
XM_015766470.1	ncRNA:20   AUACGACUGACCUGACGGUG   1   *||||||||||||=|||||| targets:1028   AAUGCUGACUGGAUUGCCAC   1047 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269785 (LOC9269785), mRNA	uncharacterized LOC9269785(LOC9269785)	coding protein	psRNATarget
AK071297.1	ncRNA:20   AUACGACUGACCUGACGGUG   1   *||||||||||||=|||||| targets:1455   AAUGCUGACUGGAUUGCCAC   1474 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023084J02, full insert sequence	NA	coding protein	psRNATarget
XM_015789586.1	ncRNA:20   AUACGACUGACCUGACGGUG   1   *||||||||||||=|||||| targets:1534   AAUGCUGACUGGAUUGCCAC   1553 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group malate dehydrogenase, chloroplastic (LOC4343993), mRNA	malate dehydrogenase, chloroplastic(LOC4343993)	coding protein	psRNATarget
AK288175.1	ncRNA:20   AUACGACUGACCUGACGGUG   1   *||||||||||||=|||||| targets:2738   AAUGCUGACUGGAUUGCCAC   2757 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090004I12, full insert sequence	NA	coding protein	psRNATarget
AK288926.1	ncRNA:20   AUACGACUGACCUGACGGUG   1   *||||||||||||=|||||| targets:1458   AAUGCUGACUGGAUUGCCAC   1477 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090082E17, full insert sequence	NA	coding protein	psRNATarget
XM_015773653.1	ncRNA:20   AUACGACUGACCUGACGGUG   1   *||||||||||||||||=|| targets:2658   AAUGCUGACUGGACUGCUAC   2677 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9267012 (LOC9267012), mRNA	uncharacterized LOC9267012(LOC9267012)	coding protein	psRNATarget
AK066170.1	ncRNA:20   AUACGACUGACCUGACGGUG   1   **||||||||||||||=||| targets:789   AUUGCUGACUGGACUGUCAC   808 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013055C24, full insert sequence	NA	coding protein	psRNATarget
AK105139.1	ncRNA:20   AUACGACUGACCUGACGGUG   1   *||*|||||||||||||||| targets:778   AAUACUGACUGGACUGCCAC   797 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:001-102-F12, full insert sequence	NA	coding protein	psRNATarget
XM_015787374.1	ncRNA:20   AUACGACUGACCUGACGGUG   1   *|*||||||||||||||||| targets:959   AACGCUGACUGGACUGCCAC   978 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277480 (LOC107277480), mRNA	uncharacterized LOC107277480(LOC107277480)	coding protein	psRNATarget
AK108946.1	ncRNA:20   AUACGACUGACCUGACGGUG   1   *|*||||||||||||||||| targets:617   AACGCUGACUGGACUGCCAC   636 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-153-B12, full insert sequence	NA	coding protein	psRNATarget
XM_015787187.1	ncRNA:20   AUACGACUGACCUGACGGUG   1   *||*||||||||||||=||| targets:1036   AAUACUGACUGGACUGUCAC   1055 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281343 (LOC107281343), mRNA	uncharacterized LOC107281343(LOC107281343)	coding protein	psRNATarget
AK120031.1	ncRNA:20   AUACGACUGACCUGACGGUG   1   *=||*||||||||||||||| targets:2247   AGUGGUGACUGGACUGCCAC   2266 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-186-D08, full insert sequence	NA	coding protein	psRNATarget
XM_015773875.1	ncRNA:20   AUACGACUGACCUGACGGUG   1   *||*|||||||||=|||||| targets:1126   AAUACUGACUGGAUUGCCAC   1145 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277200 (LOC107277200), transcript variant X2, mRNA	uncharacterized LOC107277200(LOC107277200)	coding protein	psRNATarget
XM_015773874.1	ncRNA:20   AUACGACUGACCUGACGGUG   1   *||*|||||||||=|||||| targets:1230   AAUACUGACUGGAUUGCCAC   1249 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277200 (LOC107277200), transcript variant X1, mRNA	uncharacterized LOC107277200(LOC107277200)	coding protein	psRNATarget