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BaseInfo

ncRNA ID	ath-miRf10235-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - GAGCAUUGUGGAGAUCAAAU - NA
Stem-loop(if miRNA)	U U    UU  C      CU          CCUGAAUUU    CAC      UC    U  G ACCA  GA UUGAUC  CAUAAUGCUC         GAAG   CUAUAA  CGGU G  | ||||  || ||||||  ||||||||||         ||||   ||||||  ||||  C UGGU  CU AACUAG  GUGUUACGAG         UUUC   GAUAUU  GUCA A A C    -U  A      AG          ---------    --U      -U    A
Stem-loop sequence	UGUACCAUUGACUUGAUCCUCAUAAUGCUCCCUGAAUUUGAAGCACCUAUAAUCCGGUUGAAACUGUUUAUAGUCUUUGAGCAUUGUGGAGAUCAAAUCUUGGUCCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_116912.1	ncRNA:20   UAAACUAGAGGUGUUACGAG   1   |||||||||||||||||||| targets:1823   AUUUGAUCUCCACAAUGCUC   1842 Target Full Sequence	0.0	Arabidopsis thaliana Ulp1 protease family protein partial mRNA	Ulp1 protease family protein(AT4G08430)	coding protein	psRNATarget
NM_147924.1	ncRNA:20   UAAACUAGAGGUGUUACGAG   1   ||||||||||=||||||||| targets:1331   AUUUGAUCUCUACAAUGCUC   1350 Target Full Sequence	1.5	Arabidopsis thaliana Ulp1 protease family protein partial mRNA	Ulp1 protease family protein(AT5G28235)	coding protein	psRNATarget
NM_123925.1	ncRNA:20   UAAACUAGAGGUGUUACGAG   1   ||||||||||=||||||||| targets:2162   AUUUGAUCUCUACAAUGCUC   2181 Target Full Sequence	1.5	Arabidopsis thaliana Ulp1 protease family protein partial mRNA	Ulp1 protease family protein(AT5G45570)	coding protein	psRNATarget
NM_001344632.1	ncRNA:20   UAAACUAGAGGUGUUACGAG   1   ||||||||||=||||||||| targets:2447   AUUUGAUCUCUACAAUGCUC   2466 Target Full Sequence	1.5	Arabidopsis thaliana Ulp1 protease family protein partial mRNA	Ulp1 protease family protein(AT5G45570)	coding protein	psRNATarget
BT008802.1	ncRNA:20   UAAACUAGAGGUGUUACGAG   1   ||*|||||||=||||||||| targets:1980   AUCUGAUCUCUACAAUGCUC   1999 Target Full Sequence	2.5	Arabidopsis thaliana At5g05130 gene, complete cds	NA	coding protein	psRNATarget
AY093211.1	ncRNA:20   UAAACUAGAGGUGUUACGAG   1   ||*|||||||=||||||||| targets:2035   AUCUGAUCUCUACAAUGCUC   2054 Target Full Sequence	2.5	Arabidopsis thaliana helicase-like transcription factor-like protein (At5g05130) mRNA, complete cds	NA	coding protein	psRNATarget
NM_120595.3	ncRNA:20   UAAACUAGAGGUGUUACGAG   1   ||*|||||||=||||||||| targets:2071   AUCUGAUCUCUACAAUGCUC   2090 Target Full Sequence	2.5	Arabidopsis thaliana DNA/RNA helicase protein mRNA	DNA/RNA helicase protein(AT5G05130)	coding protein	psRNATarget
NM_114185.1	ncRNA:20   UAAACUAGAGGUGUUACGAG   1   ||**|||||||||||||||* targets:114   AUGGGAUCUCCACAAUGCUA   133 Target Full Sequence	3.0	Arabidopsis thaliana hypothetical protein partial mRNA	hypothetical protein(AT3G43170)	coding protein	psRNATarget