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BaseInfo

ncRNA ID osa-miRf11865-npr
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 25
Mature sequence(if miRNA) NA - GUGGCACGCCCUGGUGUAGAUCCCG - NA
Stem-loop(if miRNA) CUUCUU A      G         C    --A    ACG
      G GAUCUA AUCAGGGUG GCCA   CCUC   C
      | |||||| ||||||||| ||||   ||||
      C CUAGAU UGGUCCCGC CGGU   GGAG   A
-GAUUG C      G         A    GUA    CGU
Stem-loop sequence CUUCUUGAGAUCUAGAUCAGGGUGCGCCAACCUCACGCAUGCGAGGAUGUGGCACGCCCUGGUGUAGAUCCCGUUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK067108.1
ncRNA:25   GCCCUAGAUGUGGUCCCGCACGGUG   1
  |||*|||||||||=||||||||||=
targets:1381   CGGCAUCUACACCGGGGCGUGCCAU   1405

2.5 Oryza sativa Japonica Group cDNA clone:J013095C08, full insert sequence NA coding protein psRNATarget
AK104628.1
ncRNA:25   GCCCUAGAUGUGGUCCCGCACGGUG   1
  |||*|||||||||=||||||||||=
targets:1304   CGGCAUCUACACCGGGGCGUGCCAU   1328

2.5 Oryza sativa Japonica Group cDNA clone:006-310-B11, full insert sequence NA coding protein psRNATarget
XM_015761250.1
ncRNA:25   GCCCUAGAUGUGGUCCCGCACGGUG   1
  |||*|||||||||=||||||||||=
targets:348   CGGCAUCUACACCGGGGCGUGCCAU   372

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107279469 (LOC107279469), mRNA uncharacterized LOC107279469(LOC107279469) coding protein psRNATarget
AK289021.1
ncRNA:25   GCCCUAGAUGUGGUCCCGCACGGUG   1
  |||*|||||||||||||||||*||=
targets:2887   CGGCAUCUACACCAGGGCGUGACAU   2911

2.5 Oryza sativa Japonica Group cDNA, clone: J090090G05, full insert sequence NA coding protein psRNATarget
XM_015795591.1
ncRNA:25   GCCCUAGAUGUGGUCCCGCACGGUG   1
  ||*|*||*||*=|||||||||||||
targets:1464   CGUGCUCGACCUCAGGGCGUGCCAC   1488

3.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325836 (LOC4325836), mRNA uncharacterized LOC4325836(LOC4325836) coding protein psRNATarget
AK066757.1
ncRNA:25   GCCCUAGAUGUGGUCCCGCACGGUG   1
  ||*|*||*||*=|||||||||||||
targets:1465   CGUGCUCGACCUCAGGGCGUGCCAC   1489

3.0 Oryza sativa Japonica Group cDNA clone:J013074A18, full insert sequence NA coding protein psRNATarget