Search result

BaseInfo

ncRNA ID	osa-miRf11862-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	21
Mature sequence(if miRNA)	NA - GCAGAACAUCAGCAUCCUCCA - NA
Stem-loop(if miRNA)	GU   A                    ----------     -   GGCGGAUGAACGAGUGCCAGAC   UGC GAACAUCAGCAUCCUCCAUU          GGGAC GUC                      U   ||| ||||||||||||||||||||          ||||| |||   ACG CUUGUAGUCGUAGGAGGUAA          CCCUG GCC                      C -C   C                    ACAAGUUCUU     G   GAGAGGUAGUUCAGCCGUACUA
Stem-loop sequence	GUUGCAGAACAUCAGCAUCCUCCAUUGGGACGUCGGCGGAUGAACGAGUGCCAGACUCAUCAUGCCGACUUGAUGGAGAGCCGGGUCCCUUCUUGAACAAAUGGAGGAUGCUGAUGUUCCGCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK103041.1	ncRNA:21   ACCUCCUACGACUACAAGACG   1   ***||||||||||||||=||| targets:1358   CCAAGGAUGCUGAUGUUUUGC   1378 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033117F03, full insert sequence	NA	coding protein	psRNATarget
XM_015777551.1	ncRNA:21   ACCUCCUACGACUACAAGACG   1   ***||||||||||||||=||| targets:1397   CCAAGGAUGCUGAUGUUUUGC   1417 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group xyloglucan galactosyltransferase KATAMARI1 homolog (LOC4331598), mRNA	xyloglucan galactosyltransferase KATAMARI1 homolog(LOC4331598)	coding protein	psRNATarget
XM_015781474.1	ncRNA:21   ACCUCCU-ACGACUACAAGACG   1   **|||||-|||||||||||||= targets:1519   AAGAGGACUGCUGAUGUUCUGU   1540 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group GTP cyclohydrolase 1 (LOC4337297), mRNA	GTP cyclohydrolase 1(LOC4337297)	coding protein	psRNATarget
AK107344.1	ncRNA:21   ACCUCCUACGACUACAAGACG   1   **||||=|||||||*|||||| targets:890   GAGAGGGUGCUGAUAUUCUGC   910 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-126-G07, full insert sequence	NA	coding protein	psRNATarget
XM_015790931.1	ncRNA:21   ACCUCCUACGACUACAAGACG   1   **||||=|||||||*|||||| targets:3575   GAGAGGGUGCUGAUAUUCUGC   3595 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group SNF2 domain-containing protein CLASSY 1 (LOC4344376), mRNA	SNF2 domain-containing protein CLASSY 1(LOC4344376)	coding protein	psRNATarget