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BaseInfo

ncRNA ID ath-miRf10234-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 20
Mature sequence(if miRNA) NA - CCAGCUUUCCAUUGCACUAA - NA
Stem-loop(if miRNA) U     AUC         U               ------     C   AA
 GUCAG   GUUAGUGCA UGGAAAGCUGGUAAA      GAGUA UAC  G
 |||||   ||||||||| |||||||||||||||      ||||| |||
 CAGUC   CAAUCACGU ACCUUUCGACCGUUU      CUCAU AUG  A
A     CAC         U               GGCAUA     -   GU
Stem-loop sequence UGUCAGAUCGUUAGUGCAUUGGAAAGCUGGUAAAGAGUACUACAAGAUGGUAUACUCAUACGGUUUGCCAGCUUUCCAUUGCACUAACCACCUGACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AX765870.1
ncRNA:20   AAUCACGUUACCUUUCGACC   1
  |||*|||||||||=||||||
targets:189   UUACUGCAAUGGAGAGCUGG   208

2.5 Sequence 79 from Patent WO03008440 NA coding protein psRNATarget
AY059118.1
ncRNA:20   AAUCACGUUACCUUUCGACC   1
  |||*|||||||||=||||||
targets:189   UUACUGCAAUGGAGAGCUGG   208

2.5 Arabidopsis thaliana putative chloroplast 50S ribosomal protein L31 (At1g75350) mRNA, complete cds NA coding protein psRNATarget
BX814293.1
ncRNA:20   AAUCACGUUACCUUUCGACC   1
  |||*|||||||||=||||||
targets:215   UUACUGCAAUGGAGAGCUGG   234

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB66ZF04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY087711.1
ncRNA:20   AAUCACGUUACCUUUCGACC   1
  |||*|||||||||=||||||
targets:271   UUACUGCAAUGGAGAGCUGG   290

2.5 Arabidopsis thaliana clone 37854 mRNA, complete sequence NA coding protein psRNATarget
AF370226.1
ncRNA:20   AAUCACGUUACCUUUCGACC   1
  |||*|||||||||=||||||
targets:270   UUACUGCAAUGGAGAGCUGG   289

2.5 Arabidopsis thaliana putative chloroplast 50S ribosomal protein L31 (At1g75350) mRNA, complete cds NA coding protein psRNATarget
NM_106189.4
ncRNA:20   AAUCACGUUACCUUUCGACC   1
  |||*|||||||||=||||||
targets:281   UUACUGCAAUGGAGAGCUGG   300

2.5 Arabidopsis thaliana Ribosomal protein L31 (emb2184), mRNA Ribosomal protein L31(emb2184) coding protein psRNATarget