Search result

BaseInfo

ncRNA ID	ath-miRf10231-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	22
Mature sequence(if miRNA)	NA - CACUCGACCACGUGGUCGAGUG - NA
Stem-loop(if miRNA)	AC         CCCA       --CA    ACAUCA GAG  CACUCGACC    GGUCGAG    GAGG      C |||  |||||||||    |||||||    |||| CUC  GUGAGCUGG    CCAGCUC    CUUC      C    CC         UGCA       ACCA    ACUUCA
Stem-loop sequence	GAGACCACUCGACCCCCAGGUCGAGCAGAGGACAUCACCACUUCACUUCACCACUCGACCACGUGGUCGAGUGCCCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_103391.1	ncRNA:22   GUGAGCUGGUGCACCAGCUCAC   1   ||||||||||||*||||||||| targets:1151   CACUCGACCACGAGGUCGAGUG   1172 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
NM_103391.1	ncRNA:22   GUGAGCUGGUGCACCAGCUCAC   1   |||||||||*|||||||||||| targets:1210   CACUCGACCCCGUGGUCGAGUG   1231 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
EF183005.1	ncRNA:22   GUGAGCUGGUGCACCAGCUCAC   1   ||||||||||||*||||||||| targets:1924   CACUCGACCACGGGGUCGAGUG   1945 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:22   GUGAGCUGGUGCACCAGCUCAC   1   =||||*|||||||||||||||* targets:643   UACUCAACCACGUGGUCGAGUA   664 Target Full Sequence	2.0	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
AY231407.1	ncRNA:22   GUGAGCUGGUGCACCAGCUCAC   1   |||||||||*|||||||||||* targets:490   CACUCGACCCCGUGGUCGAGUA   511 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
EF183042.1	ncRNA:22   GUGAGCUGGUGCACCAGCUCAC   1   ||||||||||||*||||||||* targets:1527   CACUCGACCACGAGGUCGAGUA   1548 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183005.1	ncRNA:22   GUGAGCUGG-UGCACCAGCUCAC   1   =||||||||-||||||||||||| targets:1661   UACUCGACCCACGUGGUCGAGUG   1683 Target Full Sequence	3.0	Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence	NA	coding protein	psRNATarget