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BaseInfo

ncRNA ID osa-miRf11814-npr
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 21
Mature sequence(if miRNA) NA - GGGUCCACAUGUCAGUCACCA - NA
Stem-loop(if miRNA) GU                G        G GA
  GACGUGGUGAUUGAUA GUGGGCUC A  A
  |||||||||||||||| |||||||| |
  UUGUACCACUGACUGU CACCUGGG U  U
CC                A        G GG
Stem-loop sequence GUGACGUGGUGAUUGAUAGGUGGGCUCGAGAAUGGUGGGGUCCACAUGUCAGUCACCAUGUUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015791743.1
ncRNA:21   ACCACUGACUGUACACCUGGG   1
  |||||||||||||||||=||*
targets:1535   UGGUGACUGACAUGUGGGCCA   1555

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342287 (LOC4342287), mRNA uncharacterized LOC4342287(LOC4342287) coding protein psRNATarget
AK064136.1
ncRNA:21   ACCACUGACUGUACACCUGGG   1
  |||||||||||||||||=||*
targets:1607   UGGUGACUGACAUGUGGGCCA   1627

2.5 Oryza sativa Japonica Group cDNA clone:002-102-G06, full insert sequence NA coding protein psRNATarget
XM_015789739.1
ncRNA:21   ACCACUGACUGUACACCUGGG   1
  *|||*||||||||||||=|||
targets:53   GGGUCACUGACAUGUGGGCCC   73

2.5 PREDICTED: Oryza sativa Japonica Group multifunctional methyltransferase subunit TRM112-like protein At1g22270 (LOC4343952), mRNA multifunctional methyltransferase subunit TRM112-like protein At1g22270(LOC4343952) coding protein psRNATarget
AK104480.1
ncRNA:21   ACCACUGACUGUACACCUGGG   1
  *|||*|||||=||||||||||
targets:1008   CGGUUACUGAUAUGUGGACCC   1028

2.5 Oryza sativa Japonica Group cDNA clone:006-301-G04, full insert sequence NA coding protein psRNATarget
AK061459.1
ncRNA:21   ACCACUGACUGUACACCUGGG   1
  *|||*|||||=||||||||||
targets:1010   CGGUUACUGAUAUGUGGACCC   1030

2.5 Oryza sativa Japonica Group cDNA clone:006-308-A03, full insert sequence NA coding protein psRNATarget
XM_015756254.1
ncRNA:21   ACCACUGACUGUACACCUGGG   1
  *|*||||||||||||||=|||
targets:33   CGUUGACUGACAUGUGGGCCC   53

2.5 PREDICTED: Oryza sativa Japonica Group NAC domain-containing protein 17 (LOC4347449), transcript variant X1, mRNA NAC domain-containing protein 17(LOC4347449) coding protein psRNATarget
XM_015770157.1
ncRNA:21   ACCACUGACUGUACACCUGGG   1
  *|||*|||||=||||||||||
targets:3804   CGGUUACUGAUAUGUGGACCC   3824

2.5 PREDICTED: Oryza sativa Japonica Group RING-H2 finger protein ATL3 (LOC4331022), transcript variant X1, mRNA RING-H2 finger protein ATL3(LOC4331022) coding protein psRNATarget
XM_015770158.1
ncRNA:21   ACCACUGACUGUACACCUGGG   1
  *|||*|||||=||||||||||
targets:3804   CGGUUACUGAUAUGUGGACCC   3824

2.5 PREDICTED: Oryza sativa Japonica Group RING-H2 finger protein ATL3 (LOC4331022), transcript variant X2, mRNA RING-H2 finger protein ATL3(LOC4331022) coding protein psRNATarget
AB013449.2
ncRNA:21   ACCACUGACUGUACACCUGGG   1
  ||*|*||||||||||||||||
targets:4129   UGCUCACUGACAUGUGGACCC   4149

2.0 Oryza sativa Japonica Group mRNA for Pib, complete cds NA coding protein psRNATarget
XM_015761343.1
ncRNA:21   ACCACUGACUGUACACCUGGG   1
  |*||*||||||||||||=|||
targets:53   UUGUCACUGACAUGUGGGCCC   73

2.5 PREDICTED: Oryza sativa Japonica Group biogenesis of lysosome-related organelles complex 1 subunit 1 (LOC4349586), mRNA biogenesis of lysosome-related organelles complex 1 subunit 1(LOC4349586) coding protein psRNATarget
AK072371.1
ncRNA:21   ACCACUGACUGUACACCUGGG   1
  |*||*|=||||||||||||||
targets:2614   UUGUUAUUGACAUGUGGACCC   2634

2.0 Oryza sativa Japonica Group cDNA clone:J023064M18, full insert sequence NA coding protein psRNATarget
XM_015782273.1
ncRNA:21   ACCACUGACUGUACACCUGGG   1
  **||*||||||||||||=|||
targets:86   ACGUCACUGACAUGUGGGCCC   106

2.5 PREDICTED: Oryza sativa Japonica Group L-type lectin-domain containing receptor kinase VIII.2 (LOC4337673), mRNA L-type lectin-domain containing receptor kinase VIII.2(LOC4337673) coding protein psRNATarget
XM_015759702.1
ncRNA:21   ACCACUGACUGUACACCUGGG   1
  **||*||||||||||||=|||
targets:628   ACGUAACUGACAUGUGGGCCC   648

2.5 PREDICTED: Oryza sativa Japonica Group DNA replication licensing factor MCM2 (LOC4350526), mRNA DNA replication licensing factor MCM2(LOC4350526) coding protein psRNATarget
AK288527.1
ncRNA:21   ACCACUGACUGUACACCUGGG   1
  |*||*|||||||||||||||*
targets:1026   UUGUUACUGACAUGUGGACCA   1046

2.0 Oryza sativa Japonica Group cDNA, clone: J090044J18, full insert sequence NA coding protein psRNATarget