Search result

BaseInfo

ncRNA ID ath-miRf10229-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 24
Mature sequence(if miRNA) NA - CCACUCGACCACGAGGUCGAGUGC - NA
Stem-loop(if miRNA)    AC         CCCA       --CA    ACAUCA
GAG  CACUCGACC    GGUCGAG    GAGG      C
|||  |||||||||    |||||||    ||||
CUC  GUGAGCUGG    CCAGCUC    CUUC      C
   CC         AGCA       ACCA    ACUUCA
Stem-loop sequence GAGACCACUCGACCCCCAGGUCGAGCAGAGGACAUCACCACUUCACUUCACCACUCGACCACGAGGUCGAGUGCCCUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EF183005.1
ncRNA:24   CGUGAGCUGGAGCACCAGCUCACC   1
  *=||||||||||*|||||||||||
targets:2014   CUACUCGACCUCUUGGUCGAGUGG   2037

1.5 Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence NA coding protein psRNATarget
NM_103391.1
ncRNA:24   CGUGAGCUGGAGCACCAGCUCACC   1
  *|||||||||*||||||||||||*
targets:1209   CCACUCGACCCCGUGGUCGAGUGU   1232

2.0 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
EF183005.1
ncRNA:24   CGUGAGCUGGAGCACCAGCUCACC   1
  |||||||||||||*|||||||||*
targets:1864   GCACUCGACCUCGAGGUCGAGUGA   1887

2.5 Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence NA coding protein psRNATarget
EF183005.1
ncRNA:24   CGUGAGCUGGAGCACCAGCUCACC   1
  ||||||||||*||*||||||||||
targets:1923   GCACUCGACCACGGGGUCGAGUGG   1946

2.5 Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence NA coding protein psRNATarget
AY231407.1
ncRNA:24   CGUGAGCUGGAGCACCAGCUCACC   1
  *|||||||||*|||||||||||*|
targets:489   CCACUCGACCCCGUGGUCGAGUAG   512

2.5 Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds NA coding protein psRNATarget