Search result

BaseInfo

ncRNA ID	osa-miRf11766-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	21
Mature sequence(if miRNA)	NA - GCUCGUUAUCCUAACGAGCCA - NA
Stem-loop(if miRNA)	-----     CUA                   CG         GGUUU   GCUCGUUAGGAUAACGAGC  AGCC      |||||   |||||||||||||||||||  |||G      CCAGA   CGAGCAAUCCUAUUGCUCG  UCGA CCGAA     --C                   -A
Stem-loop sequence	GGUUUCUAGCUCGUUAGGAUAACGAGCCGAGCCGAGCUAGCUCGUUAUCCUAACGAGCCAGACCAAGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK109175.1	ncRNA:21   ACCGAGCAAUCCUAUUGCUCG   1   |*||||||||||||||||||| targets:559   UAGCUCGUUAGGAUAACGAGC   579 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:002-155-H10, full insert sequence	NA	coding protein	psRNATarget
XM_015793085.1	ncRNA:21   ACCGAGCAAUCCUAUUGCUCG   1   |*||||||||||||||||||| targets:557   UAGCUCGUUAGGAUAACGAGC   577 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281835 (LOC107281835), transcript variant X1, mRNA	uncharacterized LOC107281835(LOC107281835)	coding protein	psRNATarget
XM_015793088.1	ncRNA:21   ACCGAGCAAUCCUAUUGCUCG   1   |*||||||||||||||||||| targets:569   UAGCUCGUUAGGAUAACGAGC   589 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281835 (LOC107281835), transcript variant X3, mRNA	uncharacterized LOC107281835(LOC107281835)	coding protein	psRNATarget
XM_015757797.1	ncRNA:21   ACCGAGCAAUCCUAUUGCUCG   1   |*||||||||||||||||||| targets:538   UAGCUCGUUAGGAUAACGAGC   558 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 1 (LOC4347988), transcript variant X1, mRNA	wall-associated receptor kinase 1(LOC4347988)	coding protein	psRNATarget
XM_015779748.1	ncRNA:21   ACCGAGCAAUCCUAUUGCUCG   1   **||||||||||||||||||= targets:243   AAGCUCGUUAGGAUAACGAGU   263 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group cyclic dof factor 2 (LOC4324267), mRNA	cyclic dof factor 2(LOC4324267)	coding protein	psRNATarget
AF216531.1	ncRNA:21   ACCGAGCAAUC-CUAUUGCUCG   1   |*|||||||||-|||||||||| targets:219   UAGCUCGUUAGAGAUAACGAGC   240 Target Full Sequence	3.0	Oryza sativa extensin-like proline-rich protein RiP-5 mRNA, partial cds	NA	coding protein	psRNATarget
AK069819.1	ncRNA:21   ACCGAGCAAUC-CUAUUGCUCG   1   |*|||||||||-|||||||||| targets:1423   UAGCUCGUUAGAGAUAACGAGC   1444 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023026N18, full insert sequence	NA	coding protein	psRNATarget
XM_015771083.1	ncRNA:21   ACCGAGCAAUCCUAUUGCUCG   1   |*|||||||||*||||||||| targets:186   UAGCUCGUUAGAAUAACGAGC   206 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable purine permease 11 (LOC4330368), transcript variant X1, mRNA	probable purine permease 11(LOC4330368)	coding protein	psRNATarget
AK107074.1	ncRNA:21   ACCGAGCAAUCCUAUUGCUCG   1   |*|||||||*||||||||||| targets:602   UAGCUCGUUUGGAUAACGAGC   622 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-121-F02, full insert sequence	NA	coding protein	psRNATarget
AK065336.1	ncRNA:21   ACCGAGCAAUCCUAUUGCUCG   1   |*|||||||||*||||||||| targets:558   UAGCUCGUUAGAAUAACGAGC   578 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013000O22, full insert sequence	NA	coding protein	psRNATarget
XM_015784040.1	ncRNA:21   ACCGAGCAAUCCUAUUGCUCG   1   |*|||||||*||||||||||| targets:299   UAGCUCGUUUGGAUAACGAGC   319 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group hypersensitive-induced response protein 1 (LOC4339791), transcript variant X2, mRNA	hypersensitive-induced response protein 1(LOC4339791)	coding protein	psRNATarget
AK288737.1	ncRNA:21   ACCGAGCAAUCCUAUUGCUCG   1   |*||||*|||||||||||||| targets:1918   UAGCUCAUUAGGAUAACGAGC   1938 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090063M20, full insert sequence	NA	coding protein	psRNATarget