Search result

BaseInfo

ncRNA ID	ath-miRf10222-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	21
Mature sequence(if miRNA)	NA - CUCGACCAGGGGGUCGAGUGG - NA
Stem-loop(if miRNA)	A         AGGG         A   --- G  G G  AA      A GUGAUG UACUCGACC    GGUUGAGUA CAU   G UA A UA  UGGCCG G |||||| |||||||||    ||||||||| |||   | || | ||  |||||| UACUGC GUGAGCUGG    CCAGCUCAU GUG   C GU U GU  ACUGGU U       G         GGGA         A   AAG G  G G  GG      G
Stem-loop sequence	GUGAUGAUACUCGACCAGGGGGUUGAGUAACAUGGUAGAGUAAAUGGCCGAGUGUGGUCAGGUGGUGUGGCGAAGUGAUACUCGACCAGGGGGUCGAGUGGCGUCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
DQ069808.1	ncRNA:21   GGUGAGCUGGGGGACCAGCUC   1   ||||||||||||||||||||| targets:90   CCACUCGACCCCCUGGUCGAG   110 Target Full Sequence	0.0	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:21   GGUGAGCUGGGGGACCAGCUC   1   ||||||||||||||||||||| targets:230   CCACUCGACCCCCUGGUCGAG   250 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:21   GGUGAGCUGGGGGACCAGCUC   1   |=||||||||||||||||||| targets:181   CUACUCGACCCCCUGGUCGAG   201 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:21   GGUGAGCUGGGGGACCAGCUC   1   ||||||||||||||||||||| targets:230   CCACUCGACCCCCUGGUCGAG   250 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:21   GGUGAGCUGGGGGACCAGCUC   1   |=||||||||||||||||||| targets:181   CUACUCGACCCCCUGGUCGAG   201 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:21   GGUGAGCUGGGGGACCAGCUC   1   ||||||||||||||||||||| targets:124   CCACUCGACCCCCUGGUCGAG   144 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:21   GGUGAGCUGGGGGACCAGCUC   1   ||||||||||||||||||||| targets:499   CCACUCGACCCCCUGGUCGAG   519 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:21   GGUGAGCUGGGGGACCAGCUC   1   ||||||||||||||||||||| targets:499   CCACUCGACCCCCUGGUCGAG   519 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:21   GGUGAGCUGGGGGACCAGCUC   1   =|||||||||||||||||||| targets:1571   UCACUCGACCCCCUGGUCGAG   1591 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:21   GGUGAGCUGGGGGACCAGCUC   1   ==||||||||||||||||||| targets:308   UUACUCGACCCCCUGGUCGAG   328 Target Full Sequence	0.0	Arabidopsis thaliana	NA	coding protein	psRNATarget
BT015478.1	ncRNA:21   GGUGAGCUGGGGGACCAGCUC   1   ==||||*|||||||||||||| targets:301   UUACUCAACCCCCUGGUCGAG   321 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:21   GGUGAGCUGGGGGACCAGCUC   1   ==||||*|||||||||||||| targets:301   UUACUCAACCCCCUGGUCGAG   321 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:21   GGUGAGCUGGGGGACCAGCUC   1   ==||*|||||||||||||||| targets:583   UUACYCGACCCCCUGGUCGAG   603 Target Full Sequence	1.0	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
BT015478.1	ncRNA:21   GGUGAGCUGGGGGACCAGCUC   1   *=|||||||||||*||||||| targets:136   AUACUCGACCCCCAGGUCGAG   156 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:21   GGUGAGCUGGGGGACCAGCUC   1   *=|||||||||||*||||||| targets:136   AUACUCGACCCCCAGGUCGAG   156 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:21   GGUGAGCUGGGGGACCAGCUC   1   |=|||||||||||*||||||| targets:187   CUACUCGACCCCCAGGUCGAG   207 Target Full Sequence	1.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
AY231407.1	ncRNA:21   GGUGAGCUGGGGGACCAGCUC   1   ||||||||||||*|||||||| targets:489   CCACUCGACCCCGUGGUCGAG   509 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
AY231407.1	ncRNA:21   GGUGAGCUGGGGGACCAGCUC   1   ||||||||||||*|||||||| targets:535   CCACUCGACCCCAUGGUCGAG   555 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:21   GGUGAGCUGGGGGACCAGCUC   1   |||||||||||||*||||||| targets:1104   CCACUCGACCCCCAGGUCGAG   1124 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
NM_103391.1	ncRNA:21   GGUGAGCUGGGGGACCAGCUC   1   ||||||||||||*|||||||| targets:1209   CCACUCGACCCCGUGGUCGAG   1229 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
BT025674.1	ncRNA:21   GGUGAGCUGGGGGACCAGCUC   1   *=|||=||||||||||||*|| targets:142   AUACUUGACCCCCUGGUCUAG   162 Target Full Sequence	2.5	Arabidopsis thaliana	NA	coding protein	psRNATarget