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BaseInfo

ncRNA ID osa-miRf11739-npr
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 24
Mature sequence(if miRNA) NA - GGGGAUUAACUGAACAAGGCUUGA - NA
Stem-loop(if miRNA)    A   G       U          AU    ------     --A      ----    AG A   U
CCU AGG CUUGUUC GUUGAUCCCC  GAGG      AAGGG   UUGGAG    AUAG  G GGA U
||| ||| ||||||| ||||||||||  ||||      |||||   ||||||    ||||  | ||| G
GGA UUC GAACAAG CAAUUAGGGG  UUCC      UUCCC   AACCUC    UAUC  C CCU A
   G   G       U          GG    CAUAAC     CUA      CCCU    CA A   U
Stem-loop sequence CCUAAGGGCUUGUUCUGUUGAUCCCCAUGAGGAAGGGAUUGGAGAUAGAGGAGGAUUGAUUCCACACCUAUUCCCCUCCAAAUCCCCUUCAAUACCCUUGGGGGGAUUAACUGAACAAGGCUUGAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015775819.1
ncRNA:24   AGUUCGGAACAAGUCAAUUAGGGG   1
  |=|=|||||||||=||||||||||
targets:1191   UUAGGCCUUGUUCGGUUAAUCCCC   1214

1.5 PREDICTED: Oryza sativa Japonica Group lysine-specific demethylase JMJ25 (LOC4333174), transcript variant X8, mRNA lysine-specific demethylase JMJ25(LOC4333174) coding protein psRNATarget
XM_015775817.1
ncRNA:24   AGUUCGGAACAAGUCAAUUAGGGG   1
  |=|=|||||||||=||||||||||
targets:1223   UUAGGCCUUGUUCGGUUAAUCCCC   1246

1.5 PREDICTED: Oryza sativa Japonica Group lysine-specific demethylase JMJ25 (LOC4333174), transcript variant X6, mRNA lysine-specific demethylase JMJ25(LOC4333174) coding protein psRNATarget
XM_015775821.1
ncRNA:24   AGUUCGGAACAAGUCAAUUAGGGG   1
  |=|=|||||||||=||||||||||
targets:1308   UUAGGCCUUGUUCGGUUAAUCCCC   1331

1.5 PREDICTED: Oryza sativa Japonica Group lysine-specific demethylase JMJ25 (LOC4333174), transcript variant X10, mRNA lysine-specific demethylase JMJ25(LOC4333174) coding protein psRNATarget
XM_015775818.1
ncRNA:24   AGUUCGGAACAAGUCAAUUAGGGG   1
  |=|=|||||||||=||||||||||
targets:1241   UUAGGCCUUGUUCGGUUAAUCCCC   1264

1.5 PREDICTED: Oryza sativa Japonica Group lysine-specific demethylase JMJ25 (LOC4333174), transcript variant X7, mRNA lysine-specific demethylase JMJ25(LOC4333174) coding protein psRNATarget
XM_015775820.1
ncRNA:24   AGUUCGGAACAAGUCAAUUAGGGG   1
  |=|=|||||||||=||||||||||
targets:1308   UUAGGCCUUGUUCGGUUAAUCCCC   1331

1.5 PREDICTED: Oryza sativa Japonica Group lysine-specific demethylase JMJ25 (LOC4333174), transcript variant X9, mRNA lysine-specific demethylase JMJ25(LOC4333174) coding protein psRNATarget
XM_015775816.1
ncRNA:24   AGUUCGGAACAAGUCAAUUAGGGG   1
  |=|=|||||||||=||||||||||
targets:1308   UUAGGCCUUGUUCGGUUAAUCCCC   1331

1.5 PREDICTED: Oryza sativa Japonica Group lysine-specific demethylase JMJ25 (LOC4333174), transcript variant X5, mRNA lysine-specific demethylase JMJ25(LOC4333174) coding protein psRNATarget
HI403885.1
ncRNA:24   AGUUCGGAACAAGUCAAUUAGGGG   1
  |=*||||||||||||||||||=||
targets:6   UUUAGCCUUGUUCAGUUAAUCUCC   29

1.5 Sequence 2010 from Patent EP2074227 NA coding protein psRNATarget
JB164346.1
ncRNA:24   AGUUCGGAACAAGUCAAUUAGGGG   1
  |=*||||||||||||||||||=||
targets:6   UUUAGCCUUGUUCAGUUAAUCUCC   29

1.5 Sequence 2010 from Patent EP2559767 NA coding protein psRNATarget
LQ236015.1
ncRNA:24   AGUUCGGAACAAGUCAAUUAGGGG   1
  |=*||||||||||||||||||=||
targets:6   UUUAGCCUUGUUCAGUUAAUCUCC   29

1.5 Sequence 2010 from Patent EP2985353 NA coding protein psRNATarget
XM_015756227.1
ncRNA:24   AGUUCGGAACAAGUCAAUUAGGGG   1
  |*|||||||*|||||||||||||=
targets:1532   UAAAGCCUUAUUCAGUUAAUCCCU   1555

2.0 PREDICTED: Oryza sativa Japonica Group U11/U12 small nuclear ribonucleoprotein 35 kDa protein (LOC4347560), mRNA U11/U12 small nuclear ribonucleoprotein 35 kDa protein(LOC4347560) coding protein psRNATarget
AK069744.1
ncRNA:24   AGUUCGGAACAAGUCAAUUAGGGG   1
  |*|=||||*||||||||||||||=
targets:2126   UAAGGCCUGGUUCAGUUAAUCCCU   2149

2.0 Oryza sativa Japonica Group cDNA clone:J023030M12, full insert sequence NA coding protein psRNATarget
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