Search result

BaseInfo

ncRNA ID	osa-miRf11724-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - AGGCCCGUCACAGAUGACUC - NA
Stem-loop(if miRNA)	UGA                   --         A   UAUA AACU   GGCCCGUCACAGAUGACUC  AUCUGUGAC GGC    G ||||   |||||||||||||||||||  ||||||||| ||| UUGA   UCGGGCAGUGUCUACUGGG  UAGACACUG CUG    U     -UG                   AA         C   UAAU
Stem-loop sequence	AACUUGAGGCCCGUCACAGAUGACUCAUCUGUGACAGGCUAUAGUUAAUGUCCGUCACAGAUAAGGGUCAUCUGUGACGGGCUGUAGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK063612.1	ncRNA:20   CUCAGUAGACACUGCCCGGA   1   |=|||||||||||||||||* targets:915   GGGUCAUCUGUGACGGGCCA   934 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:001-118-D05, full insert sequence	NA	coding protein	psRNATarget
AK063612.1	ncRNA:20   CUCAGUAGACACUGCCCGGA   1   |||||||||*|||||||||* targets:953   GAGUCAUCUCUGACGGGCCG   972 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-118-D05, full insert sequence	NA	coding protein	psRNATarget
AK107543.1	ncRNA:20   CUCAGUAGACACUGCCCGGA   1   |||||||||*|||||||||| targets:1585   GAGUCAUCUAUGACGGGCCU   1604 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-129-H11, full insert sequence	NA	coding protein	psRNATarget
AK107543.1	ncRNA:20   CUCAGUAGACACUGCCCGGA   1   |*||||||||||||||||=| targets:1810   GUGUCAUCUGUGACGGGCUU   1829 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-129-H11, full insert sequence	NA	coding protein	psRNATarget
AK107543.1	ncRNA:20   CUCAGUAGACACUGCCCGGA   1   *=|||||||||||||||||* targets:1629   UGGUCAUCUGUGACGGGCCC   1648 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-129-H11, full insert sequence	NA	coding protein	psRNATarget
AK107543.1	ncRNA:20   CUCAGUAGACACUGCCCGGA   1   *=|||||||||||||||||* targets:1720   UGGUCAUCUGUGACGGGCCC   1739 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-129-H11, full insert sequence	NA	coding protein	psRNATarget
AK288547.1	ncRNA:20   CUCAGUAGACACUGCCCG-GA   1   *|||||||||||||||||-|| targets:6   UAGUCAUCUGUGACGGGCUCU   26 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090046I18, full insert sequence	NA	coding protein	psRNATarget
AK288547.1	ncRNA:20   CUCAGUAGACACUGCCCG-GA   1   *|||||||||||||||||-|| targets:121   UAGUCAUCUGUGACGGGCGCU   141 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090046I18, full insert sequence	NA	coding protein	psRNATarget
HI404077.1	ncRNA:20   CUCAGUAGACACUGCCCGGA   1   *|||||*||||||||||||* targets:8   UAGUCACCUGUGACGGGCCG   27 Target Full Sequence	2.0	Sequence 2202 from Patent EP2074227	NA	coding protein	psRNATarget
JB164538.1	ncRNA:20   CUCAGUAGACACUGCCCGGA   1   *|||||*||||||||||||* targets:8   UAGUCACCUGUGACGGGCCG   27 Target Full Sequence	2.0	Sequence 2202 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236207.1	ncRNA:20   CUCAGUAGACACUGCCCGGA   1   *|||||*||||||||||||* targets:8   UAGUCACCUGUGACGGGCCG   27 Target Full Sequence	2.0	Sequence 2202 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015779008.1	ncRNA:20   CUCAGUAGACACUGCCCGGA   1   *=||||*||||||||||||* targets:1098   AGGUCACCUGUGACGGGCCC   1117 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280566 (LOC107280566), transcript variant X3, mRNA	uncharacterized LOC107280566(LOC107280566)	coding protein	psRNATarget
XM_015779007.1	ncRNA:20   CUCAGUAGACACUGCCCGGA   1   *=||||*||||||||||||* targets:2968   AGGUCACCUGUGACGGGCCC   2987 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280566 (LOC107280566), transcript variant X2, mRNA	uncharacterized LOC107280566(LOC107280566)	coding protein	psRNATarget
XM_015779006.1	ncRNA:20   CUCAGUAGACACUGCCCGGA   1   *=||||*||||||||||||* targets:3059   AGGUCACCUGUGACGGGCCC   3078 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280566 (LOC107280566), transcript variant X1, mRNA	uncharacterized LOC107280566(LOC107280566)	coding protein	psRNATarget
AK288241.1	ncRNA:20   CUCAGUAGACACUGCCCGGA   1   *=||||*||||||||||||* targets:1332   AGGUCACCUGUGACGGGCCC   1351 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090013L13, full insert sequence	NA	coding protein	psRNATarget