Search result

BaseInfo

ncRNA ID	osa-miRf11682-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	22
Mature sequence(if miRNA)	NA - ACGUAAAGUCAGAGGGACGUGG - NA
Stem-loop(if miRNA)	A           G        GG              -      AC CUCCUCU ACGUAAAGUCA AGGGACGU  GUCACUGAUGUGUG GGCCUA  C ||||||| ||||||||||| ||||||||  |||||||||||||| ||||||  U GAGGAGA UGCAUUUCAGU UCCCUGUA  CAGUGAUUGUACAC CUGGGU  U        C           A        -A              U      GU
Stem-loop sequence	CUCCUCUAACGUAAAGUCAGAGGGACGUGGGUCACUGAUGUGUGGGCCUAACCUUUGUGGGUCUCACAUGUUAGUGACAAUGUCCCUAUGACUUUACGUCAGAGGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015785140.1	ncRNA:22   GGUGCAGGGAGACUGAAAUGCA   1   |=||||=||||||||||||||| targets:1943   CUACGUUCCUCUGACUUUACGU   1964 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group putative pectinesterase/pectinesterase inhibitor 22 (LOC4327711), mRNA	putative pectinesterase/pectinesterase inhibitor 22(LOC4327711)	coding protein	psRNATarget
XM_015757871.1	ncRNA:22   GGUGCAGGGAGACUGAAAUGCA   1   ==|=|||||||||||||||||| targets:518   UUAUGUCCCUCUGACUUUACGU   539 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269295 (LOC9269295), transcript variant X2, mRNA	uncharacterized LOC9269295(LOC9269295)	coding protein	psRNATarget
AK103210.1	ncRNA:22   GGUGCAGGGAGACUGAAAUGCA   1   ||||||||||||*||||||||| targets:1288   CCACGUCCCUCUAACUUUACGU   1309 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033122L17, full insert sequence	NA	coding protein	psRNATarget
XM_015757870.1	ncRNA:22   GGUGCAGGGAGACUGAAAUGCA   1   ==|=|||||||||||||||||| targets:1367   UUAUGUCCCUCUGACUUUACGU   1388 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269295 (LOC9269295), transcript variant X1, mRNA	uncharacterized LOC9269295(LOC9269295)	coding protein	psRNATarget
XM_015790047.1	ncRNA:22   GGUGCAGGGAGACUGAAAUGCA   1   |*|=|||||||||||||||||| targets:1298   CAAUGUCCCUCUGACUUUACGU   1319 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278742 (LOC107278742), transcript variant X2, mRNA	uncharacterized LOC107278742(LOC107278742)	coding protein	psRNATarget
XM_015790046.1	ncRNA:22   GGUGCAGGGAGACUGAAAUGCA   1   |*|=|||||||||||||||||| targets:1301   CAAUGUCCCUCUGACUUUACGU   1322 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278742 (LOC107278742), transcript variant X1, mRNA	uncharacterized LOC107278742(LOC107278742)	coding protein	psRNATarget
AK121651.1	ncRNA:22   GGUGCAGGGAGACUGAAAUGCA   1   |||||||=|||||||||*|||| targets:1695   CCACGUCUCUCUGACUUCACGU   1716 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033061A12, full insert sequence	NA	coding protein	psRNATarget
AK105773.1	ncRNA:22   GGUGCAGGGAGACUGAAAUGCA   1   |||||||=|||||||||*|||| targets:1699   CCACGUCUCUCUGACUUCACGU   1720 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-202-F01, full insert sequence	NA	coding protein	psRNATarget
XM_015757550.1	ncRNA:22   GGUGCAGGGAGACUGAAAUGCA   1   |||||||=|||||||||*|||| targets:1836   CCACGUCUCUCUGACUUCACGU   1857 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cytochrome P450 89A2 (LOC4349105), mRNA	cytochrome P450 89A2(LOC4349105)	coding protein	psRNATarget
XM_015787285.1	ncRNA:22   GGUGCAGGGAGACUGAAAUGCA   1   |*|*|||||||||||||||||| targets:1047   CAAAGUCCCUCUGACUUUACGU   1068 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group very-long-chain 3-oxoacyl-CoA reductase 1-like (LOC107276302), mRNA	very-long-chain 3-oxoacyl-CoA reductase 1-like(LOC107276302)	coding protein	psRNATarget
XM_015791317.1	ncRNA:22   GGUGCAGGGAGACUGAAAUGCA   1   **|=||||*||||||||||||| targets:694   GGAUGUCCAUCUGACUUUACGU   715 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342778 (LOC4342778), transcript variant X1, mRNA	uncharacterized LOC4342778(Os07g0231700)	coding protein	psRNATarget