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BaseInfo

ncRNA ID	ath-miRf10216-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	24
Mature sequence(if miRNA)	NA - UACUCGACCUGGGGGUCGAGUGGU - NA
Stem-loop(if miRNA)	U   -               A    -  U  G    UGU   -----GG   -   A  G A GUGAAGACACUCGACCUCGUGGUCGAGUGAUGUGAUCG GG GAU ACUCGACUUCCAGGU GAGU GA GA GUCG   ACU       UCU GGC AU A G                                      A || ||| ||||||||||||||| |||| || || ||||   |||       ||| ||| || | |                                      G UC CUG UGAGCUGGGGGUCCA CUCA CU CU UAGU   UGA       UGC GAG CU G G                                      U   U   G               G    U  U  G    -GU   AGUGGAG   U   -  - - UGCUCCAGCUCGCAGAAGUAGAGGUAGUGGACUGGUAG
Stem-loop sequence	GGUGAUACUCGACUUCCAGGUAGAGUGAUGAGGUCGUGUACUGGUCUGGCAAUGAAGGUGAAGACACUCGACCUCGUGGUCGAGUGAUGUGAUCGAGUGAUGGUCAGGUGAUGGAGAUGAAGACGCUCGACCUCGUGGUCGAGUCGUGAGGUGAAGUUGUGAUGUCUUCUACUCGACCUGGGGGUCGAGUGGUCUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_103391.1	ncRNA:24   UGGUGAGCUGGGGGUCCAGCUCAU   1   |||||||||||||||||||||||| targets:1103   ACCACUCGACCCCCAGGUCGAGUA   1126 Target Full Sequence	0.0	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
BT025674.1	ncRNA:24   UGGUGAGCUGGGGGUCCAGCUCAU   1   *|=||||||||||||||||||||| targets:186   UCUACUCGACCCCCAGGUCGAGUA   209 Target Full Sequence	0.0	Arabidopsis thaliana	NA	coding protein	psRNATarget
BT014714.1	ncRNA:24   UGGU--GAGCUGGGGGUCCAGCUCAU   1   ||||--|||||||||||||||||||= targets:133   ACCAUACUCGACCCCCAGGUCGAGUG   158 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:24   UGGU--GAGCUGGGGGUCCAGCUCAU   1   ||||--|||||||||||||||||||= targets:133   ACCAUACUCGACCCCCAGGUCGAGUG   158 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:24   UGG--UGAGCUGGGGGUCCAGCUCAU   1   |||--|||||||||||*||||||||| targets:305   ACCUUACUCGACCCCCUGGUCGAGUA   330 Target Full Sequence	1.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:24   UGGUGAGCUGGGGGUCCAGCUCAU   1   ||||||||||||||*||||||||| targets:89   ACCACUCGACCCCCUGGUCGAGUA   112 Target Full Sequence	1.5	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
EF183194.1	ncRNA:24   UGGUGAGCUGGGGGUCCAGCUCAU   1   |||||||||||*|||||||||||| targets:448   ACCACUCGACCACCAGGUCGAGUA   471 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:24   UGGUGAGCUGGGGGUCCAGCUCAU   1   ||||||||||||||*||||||||| targets:123   ACCACUCGACCCCCUGGUCGAGUA   146 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:24   UGGUGAGCUGGGGGUCCAGCUCAU   1   ||||||||||||||*||||||||| targets:498   ACCACUCGACCCCCUGGUCGAGUA   521 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:24   UGGUGAGCUGGGGGUCCAGCUCAU   1   ||||||||||||||*||||||||| targets:498   ACCACUCGACCCCCUGGUCGAGUA   521 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:24   UGGUGAGCUGGGGGUCCAGCUCAU   1   =|||||||||||||*||||||||| targets:229   GCCACUCGACCCCCUGGUCGAGUA   252 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:24   UGGUGAGCUGGGGGUCCAGCUCAU   1   *|=|||||||||||*||||||||| targets:180   UCUACUCGACCCCCUGGUCGAGUA   203 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:24   UGGUGAGCUGGGGGUCCAGCUCAU   1   =|||||||||||||*||||||||| targets:229   GCCACUCGACCCCCUGGUCGAGUA   252 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:24   UGGUGAGCUGGGGGUCCAGCUCAU   1   *|=|||||||||||*||||||||| targets:180   UCUACUCGACCCCCUGGUCGAGUA   203 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:24   UGGUGAGCUGGGGGUCCAGCUCAU   1   |=||||||||||||*||||||||| targets:1570   AUCACUCGACCCCCUGGUCGAGUA   1593 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:24   UGGUGAGCUGGGGGUCCAGCUCAU   1   ===||||*||||||*||||||||| targets:300   GUUACUCAACCCCCUGGUCGAGUA   323 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:24   UGGUGAGCUGGGGGUCCAGCUCAU   1   ===||||*||||||*||||||||| targets:300   GUUACUCAACCCCCUGGUCGAGUA   323 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
AY227642.1	ncRNA:24   UGGUGAGCUGGGGGUCCAGCUCAU   1   |||||||||||||*|||||||||= targets:853   ACCACUCGACCCCGAGGUCGAGUG   876 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
AY227642.1	ncRNA:24   UGGUGAGCUGGGGGUCCAGCUCAU   1   ||||||||||**|||||||||||| targets:807   ACCACUCGACAACCAGGUCGAGUA   830 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
EF183042.1	ncRNA:24   UGGUGAGCUGGGGGUCCAGCUCAU   1   |=|||||||||||*|||||||||= targets:1616   AUCACUCGACCCCGAGGUCGAGUG   1639 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:24   UGGUGAGCUGGGGGUCCAGCUCAU   1   |==||*||||||||*||||||||| targets:582   AUUACYCGACCCCCUGGUCGAGUA   605 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget