| ncRNA ID | ath-miR5648-5p |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr1:11499384-11499883 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 22 |
| Mature sequence(if miRNA) | 151 - UUUGGAAAUAUUUGGCUUGACU - 172 |
| Stem-loop(if miRNA) |
CUUCA C CU GUUAU UC G A -UA G AA ---- A U U G CU A C --AU C C A UU AUU ----U UUU A UCAUCACUAGACUCAUGUUUU UAACCUUU CAUUCC GAA AUAG UUGAAAG UGG UGAUCUGUA GGUCUCUUGGCAUU AACAUUG AUUAAA GGUGU UGCC CUAUUU CUUCAGAUUGU UUUUAAUGUUUGGAA UAUUUGGCUUGACU UGU GAAAAAAAAGU AAGUUUCAAU AAGUGAAU UA GGAA UAUAGCUUCCAAGU UC UUAAAG U ||||||||||||||||||||| |||||||| |||||| ||| |||| ||||||| ||| ||||||||| |||||||||||||| ||||||| |||||| ||||| |||| |||||| ||||||||||| ||||||||||||||| |||||||||||||| ||| ||||||||||| |||||||||| |||||||| || |||| |||||||||||||| || |||||| AGUAGUGAUCUGAGUACAGAA AUUGGAAA GUAAGG UUU UAUC AACUUUC ACC AUUAGACGU CCAGAGAACUGUAA UUGUAAC UGAUUU CCGCA ACGG GAUAAA GAAGUCUAACA GAAGUUACAAACCUU AUAAACCGAACUGA ACA CUUUUUUUUUA UUCAAAGUUA UUCACUUA AU CCUU AUAUCGAAGGUUUA AG AAUUUU G ----- A AU AAUUU UU G A UAG A AA CGAU C U C A AC - A AAAC A A - CU -AU UAUAU -CU G |
| Stem-loop sequence | CUUCAUCAUCACUAGACUCAUGUUUUCUAACCUUUCUCAUUCCGUUAUGAAUCAUAGGUUGAAAGAUGGUAUGAUCUGUAGGGUCUCUUGGCAUUAAAACAUUGAUUAAAAGGUGUUUGCCUCUAUUUGCUUCAGAUUGUCUUUUUAAUGUUUGGAAAUAUUUGGCUUGACUCUGUAUGAAAAAAAAGUCAAGUUUCAAUCAAGUGAAUAUAUUGGAAAUUUAUAGCUUCCAAGUUUCUUUUUAAAGAUGGUUUUAAUCGAUAUAUAUUUGGAAGCUAUAUAUUCCUCUAAUUCACUUAAUUGAAACUUAAUUUUUUUUUCCAAAACAAAGUCAAGCCAAAUAUUCCAAACAUUGAAGCAACAAUCUGAAGAAAAUAGCGGCAUACGCCCUUUAGUUAGCCAAUGUUAAAAUGUCAAGAGACCAUGCAGAUUAGAUCCAACUUUCAAGCUAUUUUUUUUUAAGGAAUGUAAAAGGUUAAAAGACAUGAGUCUAGUGAUGA |
| 1 | PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012). |