Search result

BaseInfo

ncRNA ID	osa-miRf11652-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - GAGGUCCCAUGGCAGUAUUU - NA
Stem-loop(if miRNA)	A      A                      GUCAAAAAAAA  GUACAACAGGAUGC CC UGCAAA GAGGUCCCAUGGCAGUAUUUGC           CC              C || |||||| ||||||||||||||||||||||           ||              A GG ACGUUU CUCCAGGGUACCGUCAUAAACG           UG              C   C      C                      -----------  GGCAAAAAUGAUUG
Stem-loop sequence	CCAUGCAAAAGAGGUCCCAUGGCAGUAUUUGCGUCAAAAAAAACCGUACAACAGGAUGCCACGUUAGUAAAAACGGGUGCAAAUACUGCCAUGGGACCUCCUUUGCACGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288383.1	ncRNA:20   UUUAUGACGGUACCCUGGAG   1   ||||||||||||*||||||| targets:660   AAAUACUGCCAUCGGACCUC   679 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090026P15, full insert sequence	NA	coding protein	psRNATarget
AK241365.1	ncRNA:20   UUUAUGACGGUACCCUGGAG   1   |*|||||||||*|||||||| targets:1125   AUAUACUGCCAAGGGACCUC   1144 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065152G13, full insert sequence	NA	coding protein	psRNATarget
XM_015779606.1	ncRNA:20   UUUAUGACGGUACCCUGGAG   1   =*|||||||||*|||||||| targets:51   GUAUACUGCCAAGGGACCUC   70 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group peptide methionine sulfoxide reductase A2-2 (LOC107277650), mRNA	peptide methionine sulfoxide reductase A2-2(LOC107277650)	coding protein	psRNATarget
XM_015759702.1	ncRNA:20   UUUAUGACGGUACCCUGGAG   1   *|||||||||*||||||||* targets:663   CAAUACUGCCUUGGGACCUA   682 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group DNA replication licensing factor MCM2 (LOC4350526), mRNA	DNA replication licensing factor MCM2(LOC4350526)	coding protein	psRNATarget
XM_015768799.1	ncRNA:20   UUUAUGACGGUACCCUGGAG   1   **|||*|||||||||||||* targets:1488   CUAUAGUGCCAUGGGACCUA   1507 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group calcium-binding protein KIC-like (LOC107279951), mRNA	calcium-binding protein KIC-like(LOC107279951)	coding protein	psRNATarget
AK287568.1	ncRNA:20   UUUAUGACGGUACCCUGGAG   1   **|||*|||||||||||||* targets:1017   CUAUAGUGCCAUGGGACCUA   1036 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J065028F01, full insert sequence	NA	coding protein	psRNATarget