Search result

BaseInfo

ncRNA ID	osa-miRf11634-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	25
Mature sequence(if miRNA)	NA - CGUCCCACGUGGCAUUGACGUGACG - NA
Stem-loop(if miRNA)	AC         U            A    -----------UAC   GCAACUAUAUCUCA ACUAGGUC  CGUCCCACG GGCAUUGACGUG CGCU              GUG              G ||||||||  ||||||||| |||||||||||| ||||              |||              C UGAUCUAG  GCAGGGUGC CCGUAACUGCAC GCGA              UUU              U         AA         U            C    CUCUAUAUCAAAAA   AAUAAAAAAACACA
Stem-loop sequence	ACUAGGUCACCGUCCCACGUGGCAUUGACGUGACGCUUACGUGGCAACUAUAUCUCAGCUACACAAAAAAAUAAUUUAAAAACUAUAUCUCAGCGCCACGUCAAUGCCUCGUGGGACGAAGAUCUAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT829459.1	ncRNA:25   GCAGUGCAGUUACGGUGCACCCUGC   1   |||||||||||||||||||||||=| targets:395   CGUCACGUCAAUGCCACGUGGGAUG   419 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA126P04, full insert sequence	NA	coding protein	psRNATarget
XM_015761803.1	ncRNA:25   GCAGUGCAGUUACGGUGCACCCUGC   1   |||||||||=|||||||||||||=| targets:1511   CGUCACGUCGAUGCCACGUGGGAUG   1535 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable trans-2-enoyl-CoA reductase, mitochondrial (LOC9272332), transcript variant X1, mRNA	probable trans-2-enoyl-CoA reductase, mitochondrial(LOC9272332)	coding protein	psRNATarget
XM_015764298.1	ncRNA:25   GCAGUGCAGUUACGGUGCACCCUGC   1   |||||||||=|||||||||||||=| targets:372   CGUCACGUCGAUGCCACGUGGGAUG   396 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable trans-2-enoyl-CoA reductase, mitochondrial (LOC4351241), transcript variant X3, mRNA	probable trans-2-enoyl-CoA reductase, mitochondrial(LOC4351241)	coding protein	psRNATarget
XM_015773939.1	ncRNA:25   GCAGUGCAGUUACGGUGCACCCUGC   1   ||*|||||||||||||||||||||| targets:32   CGCCACGUCAAUGCCACGUGGGACG   56 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group probable isoaspartyl peptidase/L-asparaginase 2 (LOC107280261), mRNA	probable isoaspartyl peptidase/L-asparaginase 2(LOC107280261)	coding protein	psRNATarget
AK288458.1	ncRNA:25   GCAGUGCAGUUACGGUGCACCCUGC   1   ||*||=|||||||||||*||||||| targets:4876   CGCCAUGUCAAUGCCACAUGGGACG   4900 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090035E13, full insert sequence	NA	coding protein	psRNATarget
XM_015772169.1	ncRNA:25   GCAGUGCAGUUACGGUGCACCCUGC   1   ||*|||||||=|||||||||||*|| targets:271   CGCCACGUCAGUGCCACGUGGGUCG   295 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group autophagy-related protein 18b (LOC4330978), mRNA	autophagy-related protein 18b(LOC4330978)	coding protein	psRNATarget
AK099697.1	ncRNA:25   GCAGUGCAGUUACGGUGCACCCUGC   1   ||*|||||||=|||||||||||*|| targets:276   CGCCACGUCAGUGCCACGUGGGUCG   300 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013074J03, full insert sequence	NA	coding protein	psRNATarget
XM_015775231.1	ncRNA:25   GCAGUGCAGUUACGGUGCACCCUGC   1   =|*||||||||||||||*||||||| targets:1259   UGACACGUCAAUGCCACAUGGGACG   1283 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4331473 (LOC4331473), transcript variant X3, mRNA	uncharacterized LOC4331473(LOC4331473)	coding protein	psRNATarget
XM_015775234.1	ncRNA:25   GCAGUGCAGUUACGGUGCACCCUGC   1   =|*||||||||||||||*||||||| targets:1259   UGACACGUCAAUGCCACAUGGGACG   1283 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4331473 (LOC4331473), transcript variant X6, mRNA	uncharacterized LOC4331473(LOC4331473)	coding protein	psRNATarget
XM_015775229.1	ncRNA:25   GCAGUGCAGUUACGGUGCACCCUGC   1   =|*||||||||||||||*||||||| targets:1249   UGACACGUCAAUGCCACAUGGGACG   1273 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4331473 (LOC4331473), transcript variant X1, mRNA	uncharacterized LOC4331473(LOC4331473)	coding protein	psRNATarget
AK243575.1	ncRNA:25   GCAGUGCAGUUACGGUGCACCCUGC   1   =|*||||||||||||||*||||||| targets:1209   UGACACGUCAAUGCCACAUGGGACG   1233 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J100082H15, full insert sequence	NA	coding protein	psRNATarget
XM_015775230.1	ncRNA:25   GCAGUGCAGUUACGGUGCACCCUGC   1   =|*||||||||||||||*||||||| targets:1084   UGACACGUCAAUGCCACAUGGGACG   1108 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4331473 (LOC4331473), transcript variant X2, mRNA	uncharacterized LOC4331473(LOC4331473)	coding protein	psRNATarget
AK288624.1	ncRNA:25   GCA-----GUGCAGUUACGGUGCACCCUGC   1   |||-----||=|||||||||||||||*||| targets:4215   CGUAAGUGCAUGUCAAUGCCACGUGGAACG   4244 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090054H14, full insert sequence	NA	coding protein	psRNATarget
AK061571.1	ncRNA:25   GCAGUGCAGUUACGGUGCACCCUGC   1   ||-|==||*|||||||||||||||| targets:730   CG-CGUGUGAAUGCCACGUGGGACG   753 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:006-311-F11, full insert sequence	NA	coding protein	psRNATarget
AK288961.1	ncRNA:25   GCA------GUGCAGUUACGGUGCACCCUGC   1   |||------=||*|||||*|||||||||||| targets:468   CGUAAGCACUACAUCAAUACCACGUGGGACG   498 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090084F09, full insert sequence	NA	coding protein	psRNATarget