Search result

BaseInfo

ncRNA ID	osa-miRf11609-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - AUAGGCUUGGCUCGAGCUCG - NA
Stem-loop(if miRNA)	-                     C    A CU GGCUUGA UCGAGCUCGAGCCGAGCCUGU GGAA G  C ||||||| ||||||||||||||||||||| |||| | UCGAGCU GGCUCGAGCUCGGUUCGGAUA UUUU C  G        C                     -    A AA
Stem-loop sequence	GGCUUGAUCGAGCUCGAGCCGAGCCUGUCGGAAAGCUCGAACAUUUUAUAGGCUUGGCUCGAGCUCGGCUCGAGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK066260.1	ncRNA:20   GCUCGAGCUCGGUUCGGAUA   1   |*|||||||||||||||||| targets:1252   CAAGCUCGAGCCAAGCCUAU   1271 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013059H13, full insert sequence	NA	coding protein	psRNATarget
XM_015761636.1	ncRNA:20   GCUCGAGCUCGGUUCGGAUA   1   |*|||||||||||||||||| targets:2106   CAAGCUCGAGCCAAGCCUAU   2125 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4351136 (LOC4351136), transcript variant X1, mRNA	uncharacterized LOC4351136(Os11g0685400)	coding protein	psRNATarget
XM_015761637.1	ncRNA:20   GCUCGAGCUCGGUUCGGAUA   1   |*|||||||||||||||||| targets:2110   CAAGCUCGAGCCAAGCCUAU   2129 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4351136 (LOC4351136), transcript variant X2, mRNA	uncharacterized LOC4351136(Os11g0685400)	coding protein	psRNATarget
XM_015772233.1	ncRNA:20   GCUCGAGCUCGGUUCGGAUA   1   |||||||||||||||||*|* targets:455   CGAGCUCGAGCCAAGCCAAA   474 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group acetolactate synthase small subunit 2, chloroplastic (LOC4329938), transcript variant X2, mRNA	acetolactate synthase small subunit 2, chloroplastic(LOC4329938)	coding protein	psRNATarget
XM_015772232.1	ncRNA:20   GCUCGAGCUCGGUUCGGAUA   1   |||||||||||||||||*|* targets:456   CGAGCUCGAGCCAAGCCAAA   475 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group acetolactate synthase small subunit 2, chloroplastic (LOC4329938), transcript variant X1, mRNA	acetolactate synthase small subunit 2, chloroplastic(LOC4329938)	coding protein	psRNATarget