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BaseInfo

ncRNA ID ath-miRf10205-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 24
Mature sequence(if miRNA) NA - UACUCGACCUGGUGGUCGAGUGGU - NA
Stem-loop(if miRNA)     A    -        U           GAC   ---  -    -- - G -GG -  GAUGAUGGAGGUGAAGACACUCGACCUCAUGGUCGAGUAAAGUGAUC
UCAA AGAU ACUCGACU CCAGGUUGAGU   GAG   GU CGAG  U G U   U CU                                               G
|||| |||| |||||||| |||||||||||   |||   || ||||  | | |   | ||
AGUU UCUG UGAGCUGG GGUCCAGCUCA   CUC   UA UGGU  A U G   U GU                                               A
    C    G        U           --U   CUG  G    GA G - AAG G  GAGCUGGGGCUCCAGCUCACGGGAGUAGAGGUAGUGGUCUGGUAGUG
Stem-loop sequence UCAAAAGAUACUCGACUUCCAGGUUGAGUGACGAGGUCGAGUGGUGGUCUGAUGAUGGAGGUGAAGACACUCGACCUCAUGGUCGAGUAAAGUGAUCGAGUGAUGGUCUGGUGAUGGAGAUGAGGGCACUCGACCUCGGGGUCGAGUGGUGAAGUGAAGUGGUGAUGUCCUCUACUCGACCUGGUGGUCGAGUGGUCUCUUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EF183194.1
ncRNA:24   UGGUGAGCUGGUGGUCCAGCUCAU   1
  ||||||||||||||||||||||||
targets:448   ACCACUCGACCACCAGGUCGAGUA   471

0.0 Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence NA coding protein psRNATarget
AY227642.1
ncRNA:24   UGGUGAGCUGGUGGUCCAGCUCAU   1
  ||||||||||*|||||||||||||
targets:807   ACCACUCGACAACCAGGUCGAGUA   830

1.0 Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds NA coding protein psRNATarget
NM_103391.1
ncRNA:24   UGGUGAGCUGGUGGUCCAGCUCAU   1
  |||||||||||*||||||||||||
targets:1103   ACCACUCGACCCCCAGGUCGAGUA   1126

1.5 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
EF183042.1
ncRNA:24   UGGUGAGCUGGUGGUCCAGCUCAU   1
  |||||||||||||*||||||||||
targets:1525   ACCACUCGACCACGAGGUCGAGUA   1548

1.5 Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence NA coding protein psRNATarget
BT025674.1
ncRNA:24   UGGUGAGCUGGUGGUCCAGCUCAU   1
  *|=||||||||*||||||||||||
targets:186   UCUACUCGACCCCCAGGUCGAGUA   209

1.5 Arabidopsis thaliana NA coding protein psRNATarget
NM_103391.1
ncRNA:24   UGGUGAGCUGGUGGUCCAGCUCAU   1
  |||||||||||||*|||||||||=
targets:1149   ACCACUCGACCACGAGGUCGAGUG   1172

2.5 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
BT025674.1
ncRNA:24   UG-GUGAGCUGGUGGUCCAGCUCAU   1
  ||-=|||||||||||||||||*||=
targets:106   ACAUACUCGACCACCAGGUCGCGUG   130

2.5 Arabidopsis thaliana NA coding protein psRNATarget
EF183192.1
ncRNA:24   UGGUGAGCUGGUGGUCCAGCUCAU   1
  |=|||||*||||*|||||||||||
targets:316   AUCACUCUACCAACAGGUCGAGUA   339

2.5 Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence NA coding protein psRNATarget
EF183192.1
ncRNA:24   UGGUGAGCUGGUGGUCCAGCUCAU   1
  |=|||||*||||*|||||||||||
targets:364   AUCACUCUACCAACAGGUCGAGUA   387

2.5 Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence NA coding protein psRNATarget
EF183192.1
ncRNA:24   UGGUGAGCUGGUGGUCCAGCUCAU   1
  |=|||||*||||*|||||||||||
targets:412   AUCACUCUACCAACAGGUCGAGUA   435

2.5 Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence NA coding protein psRNATarget
EF183192.1
ncRNA:24   UGGUGAGCUGGUGGUCCAGCUCAU   1
  |=|||||*|||||||*||||||||
targets:655   AUCACUCUACCACCAAGUCGAGUA   678

2.5 Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence NA coding protein psRNATarget
EF183193.1
ncRNA:24   UGGUGAGCUGGUGGUCCAGCUCAU   1
  |=|||||*||||*|||||||||||
targets:691   AUCACUCUACCAACAGGUCGAGUA   714

2.5 Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence NA coding protein psRNATarget
EF183193.1
ncRNA:24   UGGUGAGCUGGUGGUCCAGCUCAU   1
  |=|||||*||||*|||||||||||
targets:739   AUCACUCUACCAACAGGUCGAGUA   762

2.5 Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence NA coding protein psRNATarget
EF183193.1
ncRNA:24   UGGUGAGCUGGUGGUCCAGCUCAU   1
  |=|||||*||||*|||||||||||
targets:787   AUCACUCUACCAACAGGUCGAGUA   810

2.5 Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence NA coding protein psRNATarget
EF183191.1
ncRNA:24   UGGUGAGCUGGUGGUCCAGCUCAU   1
  |=|||||*||||*|||||||||||
targets:691   AUCACUCUACCAACAGGUCGAGUA   714

2.5 Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence NA coding protein psRNATarget
EF183191.1
ncRNA:24   UGGUGAGCUGGUGGUCCAGCUCAU   1
  |=|||||*||||*|||||||||||
targets:739   AUCACUCUACCAACAGGUCGAGUA   762

2.5 Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence NA coding protein psRNATarget
EF183191.1
ncRNA:24   UGGUGAGCUGGUGGUCCAGCUCAU   1
  |=|||||*||||*|||||||||||
targets:787   AUCACUCUACCAACAGGUCGAGUA   810

2.5 Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence NA coding protein psRNATarget
EF183191.1
ncRNA:24   UGGUGAGCUGGUGGUCCAGCUCAU   1
  |=|||||*|||||||*||||||||
targets:1030   AUCACUCUACCACCAAGUCGAGUA   1053

2.5 Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence NA coding protein psRNATarget
BT012022.1
ncRNA:24   UGGUGAGCUGGUGGUCCAGCUCAU   1
  |=|||||*||||*|||||||||||
targets:33   AUCACUCUACCAACAGGUCGAGUA   56

2.5 Arabidopsis thaliana At2g10890 mRNA sequence NA coding protein psRNATarget
DQ069808.1
ncRNA:24   UGGUGAGCUGGUGGUCCAGCUCAU   1
  |||||||*|||||*||||||||||
targets:43   ACCACUCAACCACAAGGUCGAGUA   66

2.5 Arabidopsis thaliana At2g10880 mRNA, partial sequence NA coding protein psRNATarget
DQ069808.1
ncRNA:24   UGGUGAGCUGGUGGUCCAGCUCAU   1
  |=|||||*||||*|||||||||||
targets:144   AUCACUCUACCAACAGGUCGAGUA   167

2.5 Arabidopsis thaliana At2g10880 mRNA, partial sequence NA coding protein psRNATarget
BT014714.1
ncRNA:24   UGGU--GAGCUGGUGGUCCAGCUCAU   1
  ||||--|||||||*|||||||||||=
targets:133   ACCAUACUCGACCCCCAGGUCGAGUG   158

2.5 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget
BT015478.1
ncRNA:24   UGGU--GAGCUGGUGGUCCAGCUCAU   1
  ||||--|||||||*|||||||||||=
targets:133   ACCAUACUCGACCCCCAGGUCGAGUG   158

2.5 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget
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