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BaseInfo

ncRNA ID	ath-miR404
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr1:11230463-11230612 [-]
Reference genome	TAIR10
Source	miRBase
Length	24
Mature sequence(if miRNA)	112 - AUUAACGCUGGCGGUUGCGGCAGC - 135
Stem-loop(if miRNA)	UAGCA  -UU  UUU  UUAAC   G                           GUG       A  CU  -C    G      UG   CG   CA     GCU GCGGUUGCGGCAGCGGCUGCGGUAGCG   GCGGCAA CA  AC  GCAG U      ||   ||   ||     ||| |||||||||||||||||||||||||||   ||||||| ||  ||  ||||      GC   GC   GU     UGG CGCCAACGCCGUCGCCGACGCCGUCGC   CGCCGUU GU  UG  UGUU U --GCA  UUU  -UU  UUCUU   A                           AGA       -  UU  CU    G
Stem-loop sequence	UAGCAUGUUCGUUUCAUUAACGCUGGCGGUUGCGGCAGCGGCUGCGGUAGCGGUGGCGGCAAACACUACCGCAGGUUGUUGUUCGUUUUGUUGCCGCAGACGCUGCCGCAGCCGCUGCCGCAACCGCAGGUUUCUUUGUUCGUUUCGACG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK220830.1	ncRNA:24   CGACGGCGUUGGCGGUCGCAAUUA   1   |||||||||||||||||||*|||| targets:549   GCUGCCGCAACCGCCAGCGGUAAU   572 Target Full Sequence	1.5	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-35-J12	NA	coding protein	psRNATarget
NM_001331714.1	ncRNA:24   CGACGGCGUUGGCGGUCGCAAUUA   1   |||||||||||||||||||*|||| targets:3354   GCUGCCGCAACCGCCAGCGGUAAU   3377 Target Full Sequence	1.5	Arabidopsis thaliana Leucine-rich repeat transmembrane protein kinase mRNA	Leucine-rich repeat transmembrane protein kinase(AT1G07650)	coding protein	psRNATarget
NM_001198001.2	ncRNA:24   CGACGGCGUUGGCGGUCGCAAUUA   1   |||||||||||||||||||*|||| targets:3450   GCUGCCGCAACCGCCAGCGGUAAU   3473 Target Full Sequence	1.5	Arabidopsis thaliana Leucine-rich repeat transmembrane protein kinase mRNA	Leucine-rich repeat transmembrane protein kinase(AT1G07650)	coding protein	psRNATarget
NM_100638.5	ncRNA:24   CGACGGCGUUGGCGGUCGCAAUUA   1   |||||||||||||||||||*|||| targets:3559   GCUGCCGCAACCGCCAGCGGUAAU   3582 Target Full Sequence	1.5	Arabidopsis thaliana Leucine-rich repeat transmembrane protein kinase mRNA	Leucine-rich repeat transmembrane protein kinase(AT1G07650)	coding protein	psRNATarget

Reference

1	PMID:15258262 "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis"; Sunkar R, Zhu JK; Plant Cell. 16:2001-2019(2004).
2	PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010).