Search result

BaseInfo

ncRNA ID	osa-miRf11561-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	23
Mature sequence(if miRNA)	NA - UUCGCGGGUUAGUCACUUACACC - NA
Stem-loop(if miRNA)	AU                G CAA       -            UC         G G CUAG  UUAGGGGUGUAAGUGG U   CCGCGAA UCCACUUAUAGG  AAAAUAAGC G C ||||  |||||||||||||||| |   ||||||| ||||||||||||  ||||||||| | U GAUC  AAUCCCCACAUUCACU A   GGCGCUU GGGUGAAUAUUU  UUUUAUUCG C C     --                G UUG       U            GA         G G
Stem-loop sequence	CUAGAUUUAGGGGUGUAAGUGGGUCAACCGCGAAUCCACUUAUAGGUCAAAAUAAGCGGGCUCGCGGCUUAUUUUAGUUUAUAAGUGGGUUUCGCGGGUUAGUCACUUACACCCCUAACUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK107859.1	ncRNA:23   CCACAUUCACUGAUUGGGCGCUU   1   ||||||=|||=|||||||||||| targets:825   GGUGUAGGUGGCUAACCCGCGAA   847 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-134-B05, full insert sequence	NA	coding protein	psRNATarget
XM_015769486.1	ncRNA:23   CCACAUUCACUGAUUGGGCGCUU   1   ||||||=|||=|||||||||||| targets:831   GGUGUAGGUGGCUAACCCGCGAA   853 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329481 (LOC4329481), mRNA	uncharacterized LOC4329481(LOC4329481)	coding protein	psRNATarget
AK102148.1	ncRNA:23   CCACAUUCACUGAUUGGGCGCUU   1   ||||||=|||=|||||||||||| targets:838   GGUGUAGGUGGCUAACCCGCGAA   860 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033086C12, full insert sequence	NA	coding protein	psRNATarget
XM_015785563.1	ncRNA:23   CCA-CAUUCACUGAUUGGGCGCUU   1   |||-|||||*|=|||||||||||| targets:1814   GGUUGUAAGCGGCUAACCCGCGAA   1837 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group lysosomal Pro-X carboxypeptidase (LOC4341667), transcript variant X1, mRNA	lysosomal Pro-X carboxypeptidase(LOC4341667)	coding protein	psRNATarget
AK068457.1	ncRNA:23   CCA-CAUUCACUGAUUGGGCGCUU   1   |||-|||||*|=|||||||||||| targets:1811   GGUUGUAAGCGGCUAACCCGCGAA   1834 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013151A14, full insert sequence	NA	coding protein	psRNATarget