Search result

BaseInfo

ncRNA ID ath-miRf10204-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 22
Mature sequence(if miRNA) NA - UCGAGUAUGCAGUCGAGUGGUG - NA
Stem-loop(if miRNA) GA   G        CCA    G    G   AU    --           AUC    UU UG    UGUG
  ACA UACUCGAC   CGUG UCGA UGA  AGCU  GGAGUCUUCUU   UUCC  G  CUCG    U
  ||| ||||||||   |||| |||| |||  ||||  |||||||||||   ||||  |  ||||
  UGU GUGAGCUG   GUAU AGCU ACU  UCGA  UCUCGGAAGAA   AAGG  C  GAGU    C
-C   G        -AC    G    -   GU    AG           -GU    -- GU    UGGU
Stem-loop sequence GAACAGUACUCGACCCACGUGGUCGAGUGAAUAGCUGGAGUCUUCUUAUCUUCCUUGUGCUCGUGUGUCUGGUUGAGUGCGGAAUGAAGAAGGCUCUGAAGCUUGUCAUCGAGUAUGCAGUCGAGUGGUGUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EF183194.1
ncRNA:22   GUGGUGAGCUGACGUAUGAGCU   1
  ||||||||||||||||||||||
targets:607   CACCACUCGACUGCAUACUCGA   628

0.0 Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence NA coding protein psRNATarget
AY227642.1
ncRNA:22   GUGGUGAGCUGACGUAUGAGCU   1
  ||||||||||||||||||||||
targets:958   CACCACUCGACUGCAUACUCGA   979

0.0 Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds NA coding protein psRNATarget
EF183042.1
ncRNA:22   GUGGUGAGCUGACGUAUGAGCU   1
  ||||||||||||||=|||||||
targets:1767   CACCACUCGACUGCGUACUCGA   1788

1.5 Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence NA coding protein psRNATarget
AY231407.1
ncRNA:22   GUGGUGAGCUGACGUAUGAGCU   1
  =|=|||||||||*|||||||||
targets:718   UAUCACUCGACUACAUACUCGA   739

1.5 Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds NA coding protein psRNATarget