ncRNA ID | ath-miRf10204-npr |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | NA |
Reference genome | NA |
Source | PNRD |
Length | 22 |
Mature sequence(if miRNA) | NA - UCGAGUAUGCAGUCGAGUGGUG - NA |
Stem-loop(if miRNA) |
GA   G        CCA    G    G   AU    --           AUC    UU UG    UGUG   ACA UACUCGAC   CGUG UCGA UGA  AGCU  GGAGUCUUCUU   UUCC  G  CUCG    U   ||| ||||||||   |||| |||| |||  ||||  |||||||||||   ||||  |  ||||   UGU GUGAGCUG   GUAU AGCU ACU  UCGA  UCUCGGAAGAA   AAGG  C  GAGU    C -C   G        -AC    G    -   GU    AG           -GU    -- GU    UGGU |
Stem-loop sequence | GAACAGUACUCGACCCACGUGGUCGAGUGAAUAGCUGGAGUCUUCUUAUCUUCCUUGUGCUCGUGUGUCUGGUUGAGUGCGGAAUGAAGAAGGCUCUGAAGCUUGUCAUCGAGUAUGCAGUCGAGUGGUGUC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
EF183194.1 |
|
0.0 | Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence | NA | coding protein | psRNATarget | |||||||||
AY227642.1 |
|
0.0 | Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
EF183042.1 |
|
1.5 | Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence | NA | coding protein | psRNATarget | |||||||||
AY231407.1 |
|
1.5 | Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds | NA | coding protein | psRNATarget |