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BaseInfo

ncRNA ID osa-miRf11519-npr
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 22
Mature sequence(if miRNA) NA - CAUUUUGUCAGGAAGUUCCGGG - NA
Stem-loop(if miRNA)       CA       G    G         A     UG    UGCCCU
GUCAGA  CCCGGAA UUCC GGCAAAAUG CCGGA  UUCC      G
||||||  ||||||| |||| ||||||||| |||||  ||||
UAGUCU  GGGCCUU AAGG CUGUUUUAC GGCCU  AAGG      U
      UC       G    A         A     UG    UCAGAA
Stem-loop sequence GUCAGACACCCGGAAGUUCCGGGCAAAAUGACCGGAUGUUCCUGCCCUGUAAGACUGGAAGUUCCGGACAUUUUGUCAGGAAGUUCCGGGCUUCUGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK101773.1
ncRNA:22   GGGCCUUGAAGGACUGUUUUAC   1
  ***||||||||||||||||=|*
targets:384   GAGGGAACUUCCUGACAAAGUU   405

2.5 Oryza sativa Japonica Group cDNA clone:J033064L16, full insert sequence NA coding protein psRNATarget
XM_015762416.1
ncRNA:22   GGGCCUUGAAGGACUGUUUUAC   1
  ***||||||||||||||||=|*
targets:392   GAGGGAACUUCCUGACAAAGUU   413

2.5 PREDICTED: Oryza sativa Japonica Group disease resistance protein RPM1 (LOC4350125), transcript variant X1, mRNA disease resistance protein RPM1(LOC4350125) coding protein psRNATarget
XM_015762417.1
ncRNA:22   GGGCCUUGAAGGACUGUUUUAC   1
  ***||||||||||||||||=|*
targets:409   GAGGGAACUUCCUGACAAAGUU   430

2.5 PREDICTED: Oryza sativa Japonica Group disease resistance protein RPM1 (LOC4350125), transcript variant X2, mRNA disease resistance protein RPM1(LOC4350125) coding protein psRNATarget