Search result

BaseInfo

ncRNA ID	osa-miRf11510-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	22
Mature sequence(if miRNA)	NA - CUGUUUGGCACAGCUCUAGCUC - NA
Stem-loop(if miRNA)	U  A           AC              CUCC AAUU AG GCCUGUUUGGC  AGCUCUAGCUCUAG    A |||| || |||||||||||  ||||||||||||||    C UUAA UC CGGACAAACCG  UCGAGGUCGAGGUU    C     U  C           AC              CUCC
Stem-loop sequence	AAUUUAGAGCCUGUUUGGCACAGCUCUAGCUCUAGCUCCACCCCUCUUGGAGCUGGAGCUCAGCCAAACAGGCCCUUAAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015768148.1	ncRNA:22   CUCGAUCUCGACACGGUUUGUC   1   |||||=|||||||||||||||| targets:1255   GAGCUGGAGCUGUGCCAAACAG   1276 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group chorismate mutase 2 (LOC4328508), mRNA	chorismate mutase 2(LOC4328508)	coding protein	psRNATarget
XM_015789462.1	ncRNA:22   CUCGAUCUCGACACGGUUUGUC   1   ||||||||||||||=||||||| targets:425   GAGCUAGAGCUGUGUCAAACAG   446 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group proline-, glutamic acid- and leucine-rich protein 1 (LOC4343789), mRNA	proline-, glutamic acid- and leucine-rich protein 1(LOC4343789)	coding protein	psRNATarget
AK121068.1	ncRNA:22   CUCGAUCUCGACACGGUUUGUC   1   |||=|=|||||||||||||||| targets:1338   GAGUUGGAGCUGUGCCAAACAG   1359 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023061D24, full insert sequence	NA	coding protein	psRNATarget
XM_015790197.1	ncRNA:22   CUCGAUCUCGACACGGUUUGUC   1   |||||=|||||||||||||=|| targets:270   GAGCUGGAGCUGUGCCAAAUAG   291 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pectinesterase (LOC4344369), mRNA	pectinesterase(LOC4344369)	coding protein	psRNATarget
XM_015775467.1	ncRNA:22   CUCGAUCUCGACACGGUUUGUC   1   |||||||||=|||||||||||* targets:1462   GAGCUAGAGUUGUGCCAAACAA   1483 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group elongation of fatty acids protein 3-like (LOC4333830), mRNA	elongation of fatty acids protein 3-like(LOC4333830)	coding protein	psRNATarget
XM_015775467.1	ncRNA:22   CUCGAUCUCGACACGGUUUGUC   1   |||||=*||||||||||||||| targets:1984   GAGCUGUAGCUGUGCCAAACAG   2005 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group elongation of fatty acids protein 3-like (LOC4333830), mRNA	elongation of fatty acids protein 3-like(LOC4333830)	coding protein	psRNATarget
XM_015756167.1	ncRNA:22   CUCGAUCUCGACACGGUUUGUC   1   |||||=||||*||||||||||| targets:842   GAGCUGGAGCAGUGCCAAACAG   863 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group EG45-like domain containing protein (LOC107276928), mRNA	EG45-like domain containing protein(LOC107276928)	coding protein	psRNATarget
AK288470.1	ncRNA:22   CUCGAUCUCGACACGGUUUGUC   1   |||=|||||||||*|||||||| targets:3468   GAGUUAGAGCUGUACCAAACAG   3489 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090037J05, full insert sequence	NA	coding protein	psRNATarget
BT130238.1	ncRNA:22   CUCGAUCUCGACACGGUUUGUC   1   |*|||||||||*|||||||||| targets:76   GCGCUAGAGCUCUGCCAAACAG   97 Target Full Sequence	1.5	Oryza sativa clone RRlibB00270 mRNA sequence	NA	coding protein	psRNATarget