Search result

BaseInfo

ncRNA ID	osa-miRf11505-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	25
Mature sequence(if miRNA)	NA - UCAGUGACUCAAAGUCAGAGGGAAG - NA
Stem-loop(if miRNA)	C       A    -GU                --  -  UU ACUUAC UCCCUCU ACUU   GUCACUGACGUGUGGG  CC CU  A |||||| ||||||| ||||   ||||||||||||||||  || || UGAAUG AGGGAGA UGAA   CAGUGACUGUACACCC  GG GA  C       A       C    ACU                CA  U  CC
Stem-loop sequence	ACUUACCUCCCUCUAACUUGUGUCACUGACGUGUGGGCCCUUUACCCAGUGGACCCCACAUGUCAGUGACUCAAAGUCAGAGGGAAGUAAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK059348.1	ncRNA:25   GAAGGGAGACUGAAACUCAGUGACU   1   |||||=||||||||||||||||||| targets:454   CUUCCUUCUGACUUUGAGUCACUGA   478 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:001-026-C07, full insert sequence	NA	coding protein	psRNATarget
XM_015776745.1	ncRNA:25   GAAGGGAGACUGAAACUCAGUGACU   1   |||||||||||||||||||||=||| targets:1459   CUUCCCUCUGACUUUGAGUCAUUGA   1483 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group CRS2-like protein, chloroplastic (LOC4332828), transcript variant X2, mRNA	CRS2-like protein, chloroplastic(LOC4332828)	coding protein	psRNATarget
XM_015776744.1	ncRNA:25   GAAGGGAGACUGAAACUCAGUGACU   1   |||||||||||||||||||||=||| targets:1667   CUUCCCUCUGACUUUGAGUCAUUGA   1691 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group CRS2-like protein, chloroplastic (LOC4332828), transcript variant X1, mRNA	CRS2-like protein, chloroplastic(LOC4332828)	coding protein	psRNATarget
AK073756.1	ncRNA:25   GAAGGGAGACUGAAACUCAGUGACU   1   |||||||||||||||||||||=||| targets:2618   CUUCCCUCUGACUUUGAGUCAUUGA   2642 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033067M13, full insert sequence	NA	coding protein	psRNATarget
AK064379.1	ncRNA:25   GAAGGGAGACUGAAACUCAGUGACU   1   ***==||||||||||||||*||||| targets:1146   GGAUUCUCUGACUUUGAGUGACUGA   1170 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-108-D10, full insert sequence	NA	coding protein	psRNATarget
XM_015781398.1	ncRNA:25   GAAGGGAGACUGAAACUCAGUGACU   1   ***==||||||||||||||*||||| targets:3537   GGAUUCUCUGACUUUGAGUGACUGA   3561 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable RNA-dependent RNA polymerase 2 (LOC4336092), mRNA	probable RNA-dependent RNA polymerase 2(LOC4336092)	coding protein	psRNATarget