ncRNA ID | ath-miR167d |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr1:11137539-11137915 [+] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | 18 - UGAAGCUGCCAGCAUGAUCUGG - 39 |
Stem-loop(if miRNA) |
U      -U     AA           C  C           AUC    CA  -C            U    AAACUUCUU  UAAUUUAUGCACACACAUACAGCUCUUAAUGGCCACAACUCAAAGUUAUAAUUAGUGCAUGAUCUCUAGUUAUUUGACUGCUUUUAAUAUAUGUUUAUGGAUUCACGCAUG  GUUGGU  UUUAG  GCUGAAGCUGC AG AUGAUCUGGUA   GCUA  UA  GACAUACACACA CACU         UA                                                                                                               U  ||||||  |||||  ||||||||||| || |||||||||||   ||||  ||  |||||||||||| ||||         ||  CAACCA  AAAUC  UGACUUCGACG UC UACUGGAUCAU   UGAU  AU  UUGUGUGUGUGU GUGA         UG                                                                                                               G A      CU     AC           -  C           -GA    AG  AU            -    --------C  UGUGUGUGGUGUAUGUAGAUAUAUAUAUGAUUAUUUUUGUCUUAAAACUUGCCCAAGUUUAACUACACAUGGUAUGUGUUUCACGUACGUACAUUUAAUACAUGUAUGUGU |
Stem-loop sequence | UGUUGGUUUUUAGAAGCUGAAGCUGCCAGCAUGAUCUGGUAAUCGCUACAUACGACAUACACACAUCACUAAACUUCUUUAUAAUUUAUGCACACACAUACAGCUCUUAAUGGCCACAACUCAAAGUUAUAAUUAGUGCAUGAUCUCUAGUUAUUUGACUGCUUUUAAUAUAUGUUUAUGGAUUCACGCAUGUGUGUGUAUGUACAUAAUUUACAUGCAUGCACUUUGUGUAUGGUACACAUCAAUUUGAACCCGUUCAAAAUUCUGUUUUUAUUAGUAUAUAUAUAGAUGUAUGUGGUGUGUGUGUCAGUGUGUGUGUGUGUUUAUAGAUAGUAGUACUAGGUCAUCCUGCAGCUUCAGUCACUAAAUCACCAACA |
1 | PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004). |
2 | PMID:16040653
"Expression of Arabidopsis MIRNA genes"; Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC; Plant Physiol. 138:2145-2154(2005). |
3 | PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006). |
4 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
5 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |