Search result

BaseInfo

ncRNA ID osa-miRf11440-npr
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 21
Mature sequence(if miRNA) NA - GGUCAUCGGUGACGGGCUUCA - NA
Stem-loop(if miRNA)     A                    C   UAUGG - U
GAUG GGGUCAUCGGUGACGGGCUU AAA     C C G
|||| |||||||||||||||||||| |||     | | A
CUAU CUCAGUAGCCACUGCCCGAA UUU     G G U
    A                    A   CAGUA A U
Stem-loop sequence GAUGAGGGUCAUCGGUGACGGGCUUCAAAUAUGGCCUGAUUGAGAUGACUUUAAAGCCCGUCACCGAUGACUCAUAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288447.1
ncRNA:21   ACUUCGGGCAGUGGCUACUGG   1
  ||=|||||||||||||||||*
targets:470   UGGAGCCCGUCACCGAUGACA   490

2.0 Oryza sativa Japonica Group cDNA, clone: J090034N03, full insert sequence NA coding protein psRNATarget
XM_015793304.1
ncRNA:21   ACUUCGGGCAGUGGCUACUGG   1
  *|=|||||||||||||||=||
targets:152   CGGAGCCCGUCACCGAUGGCC   172

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278382 (LOC107278382), mRNA uncharacterized LOC107278382(LOC107278382) coding protein psRNATarget
AK119390.1
ncRNA:21   ACUUCGGGCAGUGGCUACUGG   1
  |*||||||||||||||||||=
targets:3126   UAAAGCCCGUCACCGAUGACU   3146

1.0 Oryza sativa Japonica Group cDNA clone:001-132-C09, full insert sequence NA coding protein psRNATarget
AK288357.1
ncRNA:21   ACUUCGGGCAGUGGCUACUGG   1
  ||=|*|||||||||||||||*
targets:2461   UGGACCCCGUCACCGAUGACA   2481

3.0 Oryza sativa Japonica Group cDNA, clone: J090024J17, full insert sequence NA coding protein psRNATarget
AB122055.1
ncRNA:21   ACUUCGGGCAGUGGCUACUGG   1
  ****|||||||||||||||||
targets:206   CCUCGCCCGUCACCGAUGACC   226

2.0 Oryza sativa Japonica Group CCR mRNA for cinnamoyl coenzyme A reductase, partial cds NA coding protein psRNATarget
LQ235905.1
ncRNA:21   ACUUCGGGCAGUGGCUACUGG   1
  |*|||||||||||*||||||=
targets:87   UAAAGCCCGUCACAGAUGACU   107

2.5 Sequence 1900 from Patent EP2985353 NA coding protein psRNATarget
JB164236.1
ncRNA:21   ACUUCGGGCAGUGGCUACUGG   1
  |*|||||||||||*||||||=
targets:87   UAAAGCCCGUCACAGAUGACU   107

2.5 Sequence 1900 from Patent EP2559767 NA coding protein psRNATarget
HI403775.1
ncRNA:21   ACUUCGGGCAGUGGCUACUGG   1
  |*|||||||||||*||||||=
targets:87   UAAAGCCCGUCACAGAUGACU   107

2.5 Sequence 1900 from Patent EP2074227 NA coding protein psRNATarget
HI403854.1
ncRNA:21   ACUUCGGGCAGUGGCUACUGG   1
  |*|||||||||||*||||||=
targets:82   UAAAGCCCGUCACAGAUGACU   102

2.5 Sequence 1979 from Patent EP2074227 NA coding protein psRNATarget
LQ235984.1
ncRNA:21   ACUUCGGGCAGUGGCUACUGG   1
  |*|||||||||||*||||||=
targets:82   UAAAGCCCGUCACAGAUGACU   102

2.5 Sequence 1979 from Patent EP2985353 NA coding protein psRNATarget
JB164315.1
ncRNA:21   ACUUCGGGCAGUGGCUACUGG   1
  |*|||||||||||*||||||=
targets:82   UAAAGCCCGUCACAGAUGACU   102

2.5 Sequence 1979 from Patent EP2559767 NA coding protein psRNATarget
XM_015758062.1
ncRNA:21   ACUUCGGGCAGUGGCUACUGG   1
  **=||||||||||*|||||||
targets:2602   AAGAGCCCGUCACGGAUGACC   2622

2.5 PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 2 (LOC9271894), mRNA wall-associated receptor kinase 2(LOC9271894) coding protein psRNATarget
XM_015758062.1
ncRNA:21   ACUUCGGGCAGUGGCUACUGG   1
  **|||||||||||*||||||=
targets:2643   CUAAGCCCGUCACGGAUGACU   2663

2.5 PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 2 (LOC9271894), mRNA wall-associated receptor kinase 2(LOC9271894) coding protein psRNATarget
AK064906.1
ncRNA:21   ACUUCGGGCAGUGGCUACUGG   1
  **|||||||||||*||||||=
targets:2261   AAAAGCCCGUCACGGAUGACU   2281

2.5 Oryza sativa Japonica Group cDNA clone:J013000L21, full insert sequence NA coding protein psRNATarget
XM_015795765.1
ncRNA:21   ACUUCGGGCAGUGGCUACUGG   1
  *****||||||||||||||||
targets:368   CCUCCCCCGUCACCGAUGACC   388

3.0 PREDICTED: Oryza sativa Japonica Group cinnamoyl-CoA reductase 1 (LOC4347074), transcript variant X1, mRNA cinnamoyl-CoA reductase 1(LOC4347074) coding protein psRNATarget
XM_015795766.1
ncRNA:21   ACUUCGGGCAGUGGCUACUGG   1
  *****||||||||||||||||
targets:370   CCUCCCCCGUCACCGAUGACC   390

3.0 PREDICTED: Oryza sativa Japonica Group cinnamoyl-CoA reductase 1 (LOC4347074), transcript variant X2, mRNA cinnamoyl-CoA reductase 1(LOC4347074) coding protein psRNATarget
AK067949.1
ncRNA:21   ACUUCGGGCAGUGGCUACUGG   1
  *****||||||||||||||||
targets:354   CCUCCCCCGUCACCGAUGACC   374

3.0 Oryza sativa Japonica Group cDNA clone:J013128P15, full insert sequence NA coding protein psRNATarget
AK107198.1
ncRNA:21   ACUUCGGGCAGUGGCUACUGG   1
  *****||||||||||||||||
targets:348   CCUCCCCCGUCACCGAUGACC   368

3.0 Oryza sativa Japonica Group cDNA clone:002-125-A12, full insert sequence NA coding protein psRNATarget
AK104860.1
ncRNA:21   ACUUCGGGCAGUGGCUACUGG   1
  *****||||||||||||||||
targets:353   CCUCCCCCGUCACCGAUGACC   373

3.0 Oryza sativa Japonica Group cDNA clone:001-043-D11, full insert sequence NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.