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BaseInfo

ncRNA ID	ath-miRf10192-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	22
Mature sequence(if miRNA)	NA - CUCGACCUGGGGGUCGAGUGGU - NA
Stem-loop(if miRNA)	UG   A           G         -  G  ----------G  -  AG  AUGGUCAGGUGAUGGAGAUGAAGACAUUCUACCUCGUGGUCGAGU G  AAG CACUCGACCUC GGGUCGAGU GA GU           AU CG  UG                                             G |  ||| ||||||||||| ||||||||| || ||           || ||  || C  UUU GUGAGCUGGGG UCCAGCUCA CU CG           UC UC  UG                                             G  GU   G           G         U  G  AAGUGUUGGAG  G  --  GUGAGCUGGGGGACCAGCUCAUCUCCUGUAGUGGUGAAGUGGAGU
Stem-loop sequence	GUGAAGACACUCGACCUCGGGGUCGAGUGAGGUGAUCGAGUGAUGGUCAGGUGAUGGAGAUGAAGACAUUCUACCUCGUGGUCGAGUGGUGAGGUGAAGUGGUGAUGUCCUCUACUCGACCAGGGGGUCGAGUGGUCUGCUGAGGUUGUGAAGCGUCUACUCGACCUGGGGGUCGAGUGGUUUUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_103391.1	ncRNA:22   UGGUGAGCUGGGGGUCCAGCUC   1   |||||||||||||||||||||| targets:1103   ACCACUCGACCCCCAGGUCGAG   1124 Target Full Sequence	0.0	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
BT025674.1	ncRNA:22   UGGUGAGCUGGGGGUCCAGCUC   1   *|=||||||||||||||||||| targets:186   UCUACUCGACCCCCAGGUCGAG   207 Target Full Sequence	0.0	Arabidopsis thaliana	NA	coding protein	psRNATarget
BT014714.1	ncRNA:22   UGGUGAGCUGGGGGUCCAGCUC   1   =|||||||||||||*||||||| targets:229   GCCACUCGACCCCCUGGUCGAG   250 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:22   UGGUGAGCUGGGGGUCCAGCUC   1   *|=|||||||||||*||||||| targets:180   UCUACUCGACCCCCUGGUCGAG   201 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:22   UGGUGAGCUGGGGGUCCAGCUC   1   =|||||||||||||*||||||| targets:229   GCCACUCGACCCCCUGGUCGAG   250 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:22   UGGUGAGCUGGGGGUCCAGCUC   1   *|=|||||||||||*||||||| targets:180   UCUACUCGACCCCCUGGUCGAG   201 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:22   UGGUGAGCUGGGGGUCCAGCUC   1   ||||||||||||||*||||||| targets:89   ACCACUCGACCCCCUGGUCGAG   110 Target Full Sequence	1.5	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
EF183194.1	ncRNA:22   UGGUGAGCUGGGGGUCCAGCUC   1   |||||||||||*|||||||||| targets:448   ACCACUCGACCACCAGGUCGAG   469 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:22   UGGUGAGCUGGGGGUCCAGCUC   1   ||||||||||||||*||||||| targets:123   ACCACUCGACCCCCUGGUCGAG   144 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
AY227642.1	ncRNA:22   UGGUGAGCUGGGGGUCCAGCUC   1   |||||||||||||*|||||||| targets:853   ACCACUCGACCCCGAGGUCGAG   874 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
EF183193.1	ncRNA:22   UGGUGAGCUGGGGGUCCAGCUC   1   ||||||||||||||*||||||| targets:498   ACCACUCGACCCCCUGGUCGAG   519 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:22   UGGUGAGCUGGGGGUCCAGCUC   1   ||||||||||||||*||||||| targets:498   ACCACUCGACCCCCUGGUCGAG   519 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:22   UGGUGAGCUGGGGGUCCAGCUC   1   |=||||||||||||*||||||| targets:1570   AUCACUCGACCCCCUGGUCGAG   1591 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:22   UGGUGAGCUGGGGGUCCAGCUC   1   |=|||||||||||*|||||||| targets:1616   AUCACUCGACCCCGAGGUCGAG   1637 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:22   UGGUGAGCUGGGGGUCCAGCUC   1   |*|||||||||||*|||||||* targets:1058   AGCACUCGACCCCGAGGUCGAC   1079 Target Full Sequence	2.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
BT014714.1	ncRNA:22   UGGU--GAGCUGGGGGUCCAGCUC   1   ||||--|||||||||||||||||| targets:133   ACCAUACUCGACCCCCAGGUCGAG   156 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:22   UGGUGAGCUGGGGGUCCAGCUC   1   ===||||*||||||*||||||| targets:300   GUUACUCAACCCCCUGGUCGAG   321 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:22   UGGU--GAGCUGGGGGUCCAGCUC   1   ||||--|||||||||||||||||| targets:133   ACCAUACUCGACCCCCAGGUCGAG   156 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:22   UGGUGAGCUGGGGGUCCAGCUC   1   ===||||*||||||*||||||| targets:300   GUUACUCAACCCCCUGGUCGAG   321 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:22   UGGUGAGCUGGGGGUCCAGCUC   1   |==||*||||||||*||||||| targets:582   AUUACYCGACCCCCUGGUCGAG   603 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget