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BaseInfo

ncRNA ID	osa-miRf11438-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - CCUUUGUUGCACAAUGGACC - NA
Stem-loop(if miRNA)	A                   C    CA    ACAUUU    ------- UCUUCAAUGACUUCGAGCAAAUUGUUAAUGGCAUGUCAGCAAACU GGUAACUUU CCUUUGUUGCACAAUGGAC ACCC  AAAC      UCAU       U                                             U ||||||||| ||||||||||||||||||| ||||  ||||      ||||       | CCAUUGAAA GGAAACAACGUGUUACCUG UGGG  UUUG      AAGC       A                                             U          C                   A    --    --AGAA    GAACACU CAGAUCGCAGAGAAAGCUGUUUUCAUACAGUACGUAUAUCCAUAC
Stem-loop sequence	GGUAACUUUACCUUUGUUGCACAAUGGACCACCCCAAAACACAUUUUCAUUUCUUCAAUGACUUCGAGCAAAUUGUUAAUGGCAUGUCAGCAAACUUUCAUACCUAUAUGCAUGACAUACUUUUGUCGAAAGAGACGCUAGACAUCACAAGCGAAAAGAGUUUGGGUAGUCCAUUGUGCAACAAAGGCAAAGUUACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015790189.1	ncRNA:20   CCAGGUAACACGUUGUUUCC   1   |||=|||||||=|||||||| targets:3220   GGUUCAUUGUGUAACAAAGG   3239 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At2g46050, mitochondrial (LOC4342867), transcript variant X6, mRNA	pentatricopeptide repeat-containing protein At2g46050, mitochondrial(LOC4342867)	coding protein	psRNATarget
XM_015790187.1	ncRNA:20   CCAGGUAACACGUUGUUUCC   1   |||=|||||||=|||||||| targets:3272   GGUUCAUUGUGUAACAAAGG   3291 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At2g46050, mitochondrial (LOC4342867), transcript variant X4, mRNA	pentatricopeptide repeat-containing protein At2g46050, mitochondrial(LOC4342867)	coding protein	psRNATarget
XM_015790184.1	ncRNA:20   CCAGGUAACACGUUGUUUCC   1   |||=|||||||=|||||||| targets:3333   GGUUCAUUGUGUAACAAAGG   3352 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At2g46050, mitochondrial (LOC4342867), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At2g46050, mitochondrial(LOC4342867)	coding protein	psRNATarget
AK062944.1	ncRNA:20   CCAGGUAACACGUUGUUUCC   1   |||=||||*||||||||||| targets:380   GGUUCAUUAUGCAACAAAGG   399 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-109-C01, full insert sequence	NA	coding protein	psRNATarget
AK122123.1	ncRNA:20   CCAGGUAACACGUUGUUUCC   1   |||*|||||||||||||=|| targets:2208   GGUGCAUUGUGCAACAAGGG   2227 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033131J21, full insert sequence	NA	coding protein	psRNATarget
AK099098.1	ncRNA:20   CCAGG-UAACACGUUGUUUCC   1   |||||-||||||||||||||* targets:445   GGUCCCAUUGUGCAACAAAGU   465 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023023I02, full insert sequence	NA	coding protein	psRNATarget
AK069048.1	ncRNA:20   CCAGG-UAACACGUUGUUUCC   1   |||||-||||||||||||||* targets:446   GGUCCCAUUGUGCAACAAAGU   466 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023009M14, full insert sequence	NA	coding protein	psRNATarget
XM_015787868.1	ncRNA:20   CCAGG-UAACACGUUGUUUCC   1   |||||-||||||||||||||* targets:453   GGUCCCAUUGUGCAACAAAGU   473 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group probable transcriptional regulator SLK3 (LOC4339967), transcript variant X1, mRNA	probable transcriptional regulator SLK3(LOC4339967)	coding protein	psRNATarget
AK100438.1	ncRNA:20   CCAGG-UAACACGUUGUUUCC   1   |||||-||||||||||||||* targets:361   GGUCCCAUUGUGCAACAAAGU   381 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023088P13, full insert sequence	NA	coding protein	psRNATarget
XM_015791189.1	ncRNA:20   CCAGGUAACACGUUGUUUCC   1   |||*|||||||||||||=|| targets:4054   GGUGCAUUGUGCAACAAGGG   4073 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group indole-3-acetaldehyde oxidase (LOC4342479), transcript variant X1, mRNA	indole-3-acetaldehyde oxidase(LOC4342479)	coding protein	psRNATarget