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BaseInfo

ncRNA ID	osa-miRf11398-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - CCGGUUGGUAACACCAACCG - NA
Stem-loop(if miRNA)	U    A    C               A      A  U  UAGU UCGG UGGUGUUACCAACCG UACUAA GA G  |||| |||| ||||||||||||||| |||||| || U  AUCA AGCC ACCACAAUGGUUGGC AUGAUU CU A A    G    A               C      -  C
Stem-loop sequence	UUAGUAUCGGCUGGUGUUACCAACCGAUACUAAAGAUGUACUCUUAGUACCGGUUGGUAACACCAACCGAGACUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK289098.1	ncRNA:20   GCCAACCACAAUGGUUGGCC   1   |||||||||||||||||||| targets:159   CGGUUGGUGUUACCAACCGG   178 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK289098.1	ncRNA:20   GCCAACCACAAUGGUUGGCC   1   ||||||||*||||||||||| targets:116   CGGUUGGUUUUACCAACCGG   135 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK288796.1	ncRNA:20   GCCAACCACAAUGGUUGGCC   1   |||||||||||||||||||| targets:1842   CGGUUGGUGUUACCAACCGG   1861 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
AK288377.1	ncRNA:20   GCCAACCACAAUGGUUGG-CC   1   ||||||||||||||||||-|| targets:1388   CGGUUGGUGUUACCAACCUGG   1408 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090026K06, full insert sequence	NA	coding protein	psRNATarget
JB164979.1	ncRNA:20   GCCAACCACAAUGGUUGGCC   1   |||||||||*|||||||||| targets:55   CGGUUGGUGCUACCAACCGG   74 Target Full Sequence	1.5	Sequence 2643 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236648.1	ncRNA:20   GCCAACCACAAUGGUUGGCC   1   |||||||||*|||||||||| targets:55   CGGUUGGUGCUACCAACCGG   74 Target Full Sequence	1.5	Sequence 2643 from Patent EP2985353	NA	coding protein	psRNATarget
HI404518.1	ncRNA:20   GCCAACCACAAUGGUUGGCC   1   |||||||||*|||||||||| targets:55   CGGUUGGUGCUACCAACCGG   74 Target Full Sequence	1.5	Sequence 2643 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015758314.1	ncRNA:20   GCCAACCACAAUGGUUGGCC   1   |||||*|||||||||||||| targets:918   CGGUUUGUGUUACCAACCGG   937 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278346 (LOC107278346), transcript variant X1, mRNA	uncharacterized LOC107278346(LOC107278346)	coding protein	psRNATarget
XM_015755226.1	ncRNA:20   GCCAACCACAAUGGUUGGCC   1   ||||||*||||||||||||| targets:82   CGGUUGAUGUUACCAACCGG   101 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278786 (LOC107278786), mRNA	uncharacterized LOC107278786(LOC107278786)	coding protein	psRNATarget
AK288424.1	ncRNA:20   GCCAACCACAAUGGUUGGCC   1   |||||*|||||||||||||| targets:2393   CGGUUAGUGUUACCAACCGG   2412 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK288405.1	ncRNA:20   GCCAACCACAAUGGUUGGCC   1   |*|||||||||||||||||| targets:2400   CCGUUGGUGUUACCAACCGG   2419 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090030E11, full insert sequence	NA	coding protein	psRNATarget
LQ236416.1	ncRNA:20   GCCAACCACAAUGGUUGGCC   1   ||*||||||||||||||=|| targets:6   CGAUUGGUGUUACCAACUGG   25 Target Full Sequence	2.5	Sequence 2411 from Patent EP2985353	NA	coding protein	psRNATarget
HI404286.1	ncRNA:20   GCCAACCACAAUGGUUGGCC   1   ||*||||||||||||||=|| targets:6   CGAUUGGUGUUACCAACUGG   25 Target Full Sequence	2.5	Sequence 2411 from Patent EP2074227	NA	coding protein	psRNATarget
JB164747.1	ncRNA:20   GCCAACCACAAUGGUUGGCC   1   ||*||||||||||||||=|| targets:6   CGAUUGGUGUUACCAACUGG   25 Target Full Sequence	2.5	Sequence 2411 from Patent EP2559767	NA	coding protein	psRNATarget
AK119916.1	ncRNA:20   GCCAACCACAAUGGUUGGCC   1   ||||||*||||||=|||||| targets:376   CGGUUGAUGUUACUAACCGG   395 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-183-F10, full insert sequence	NA	coding protein	psRNATarget
AK065811.1	ncRNA:20   GCCAACCACAAUGGUUGGCC   1   |||||*||||||=||||||| targets:1177   CGGUUUGUGUUAUCAACCGG   1196 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013039F07, full insert sequence	NA	coding protein	psRNATarget