ncRNA ID | ath-miRf10186-npr |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | NA |
Reference genome | NA |
Source | PNRD |
Length | 20 |
Mature sequence(if miRNA) | NA - CUGCGUUUGCGGGUGGUAGA - NA |
Stem-loop(if miRNA) |
  G             C    AA  C      -----    GA   -UU GAAAACUGGCGAUUUCGAGCGGUUUAAAGCG CC CUACCGCCCGCAA CGCA  CG UUGCGG     GAAG  GCU   U                               A || ||||||||||||| ||||  || ||||||     ||||  |||   |                               U GG GAUGGUGGGCGUU GCGU  GC AACGCC     UCGC  CAA   U                               A   A             U    -C  A      AACCA    --   CAA CGCUAAUUGUAGUUAGUAUCUUUGGCGAUCU |
Stem-loop sequence | CCGCUACCGCCCGCAACCGCAAACGCUUGCGGGAAGGAGCUUUUGAAAACUGGCGAUUUCGAGCGGUUUAAAGCGAUAUCUAGCGGUUUCUAUGAUUGAUGUUAAUCGCUAACAACCGCUACCAACCGCAAACGCUGCGUUUGCGGGUGGUAGAGG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_001203342.1 |
|
0.0 | Arabidopsis thaliana Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TPPI), partial mRNA | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(TPPI) | coding protein | psRNATarget | |||||||||
NM_125712.1 |
|
2.0 | Arabidopsis thaliana GDSL-like Lipase/Acylhydrolase superfamily protein partial mRNA | GDSL-like Lipase/Acylhydrolase superfamily protein(AT5G63170) | coding protein | psRNATarget |