| ncRNA ID | ath-miR399a |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr1:10227073-10227195 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 93 - UGCCAAAGGAGAUUUGCCCUG - 113 |
| Stem-loop(if miRNA) |
AAAU C A A A - C -U UU CU G AUUACAGGGUA GAUCUCU UUGGCAGG AAC CAUUA UUAGA C UGCAU C | ||||||||||| ||||||| |||||||| ||| ||||| ||||| | ||||| C UAAUGUCCCGU UUAGAGG AACCGUCU UUG GUGAU AAUUU G ACGUA U UCUU U - A A A U UC UU UU |
| Stem-loop sequence | AAAUGCAUUACAGGGUAAGAUCUCUAUUGGCAGGAAACCAUUACUUAGAUCUUUGCAUCUCUUUAUGCAUUGCUUUUAAUUAGUGAGUUAUCUGCCAAAGGAGAUUUGCCCUGUAAUUCUUCU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AY074292.1 |
|
0.0 | Arabidopsis thaliana putative E2, ubiquitin-conjugating enzyme (At2g33770) mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| NM_179887.3 |
|
0.0 | Arabidopsis thaliana phosphate 2 (PHO2), mRNA | phosphate 2(PHO2) | coding protein | psRNATarget | |||||||||
| AY074292.1 |
|
1.0 | Arabidopsis thaliana putative E2, ubiquitin-conjugating enzyme (At2g33770) mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| AY074292.1 |
|
1.0 | Arabidopsis thaliana putative E2, ubiquitin-conjugating enzyme (At2g33770) mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| AY074292.1 |
|
1.0 | Arabidopsis thaliana putative E2, ubiquitin-conjugating enzyme (At2g33770) mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| NM_179887.3 |
|
1.0 | Arabidopsis thaliana phosphate 2 (PHO2), mRNA | phosphate 2(PHO2) | coding protein | psRNATarget | |||||||||
| NM_179887.3 |
|
1.0 | Arabidopsis thaliana phosphate 2 (PHO2), mRNA | phosphate 2(PHO2) | coding protein | psRNATarget | |||||||||
| NM_179887.3 |
|
1.0 | Arabidopsis thaliana phosphate 2 (PHO2), mRNA | phosphate 2(PHO2) | coding protein | psRNATarget | |||||||||
| AY074292.1 |
|
1.5 | Arabidopsis thaliana putative E2, ubiquitin-conjugating enzyme (At2g33770) mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| NM_179887.3 |
|
1.5 | Arabidopsis thaliana phosphate 2 (PHO2), mRNA | phosphate 2(PHO2) | coding protein | psRNATarget | |||||||||
| NM_001338199.1 |
|
3.0 | Arabidopsis thaliana F-box associated ubiquitination effector protein mRNA | F-box associated ubiquitination effector protein(AT3G16020) | coding protein | psRNATarget | |||||||||
| NM_001338198.1 |
|
3.0 | Arabidopsis thaliana F-box associated ubiquitination effector protein mRNA | F-box associated ubiquitination effector protein(AT3G16020) | coding protein | psRNATarget |
| 1 | PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004). |
| 2 | PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006). |
| 3 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
| 4 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |