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BaseInfo

ncRNA ID osa-miRf11352-npr
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 23
Mature sequence(if miRNA) NA - AGGGAUUUUGGAAGGAGGUGACA - NA
Stem-loop(if miRNA)                      A                  GACUAUGUA    G
UAUAAUAUAAGGGAUUUUGGA GGAGGUGACAUAUUCUAG         UCUG A
||||||||||||||||||||| ||||||||||||||||||         ||||
GUAUUAUAUUCCCUAAAAUCU CCUCCAUUGUGUAGGAUC         AGAC U
                     C                  -----AUAG    C
Stem-loop sequence UAUAAUAUAAGGGAUUUUGGAAGGAGGUGACAUAUUCUAGGACUAUGUAUCUGGAUCCAGAGAUACUAGGAUGUGUUACCUCCCUCUAAAAUCCCUUAUAUUAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015778756.1
ncRNA:23   ACAGUGGAGGAAGGUUUUAGGGA   1
  |||||=*||||||||||||||||
targets:1391   UGUCAUAUCCUUCCAAAAUCCCU   1413

2.0 PREDICTED: Oryza sativa Japonica Group RING-H2 finger protein ATL72 (LOC4335822), transcript variant X1, mRNA RING-H2 finger protein ATL72(LOC4335822) coding protein psRNATarget
CT836442.1
ncRNA:23   ACAGUGGAGGAAGGUUUUAGGGA   1
  **|||*|||||*|||||||||||
targets:27   ACUCAACUCCUCCCAAAAUCCCU   49

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA049J13, full insert sequence NA coding protein psRNATarget
AK287872.1
ncRNA:23   ACAGUGGAGGAAGGUUUUAGGGA   1
  **|||*|||||*|||||||||||
targets:17   ACUCAACUCCUCCCAAAAUCCCU   39

2.5 Oryza sativa Japonica Group cDNA, clone: J065204K23, full insert sequence NA coding protein psRNATarget
XM_015785351.1
ncRNA:23   ACAGUGGAGGAAGGUUUUAGGGA   1
  **|||*|||||*|||||||||||
targets:33   ACUCAACUCCUCCCAAAAUCCCU   55

2.5 PREDICTED: Oryza sativa Japonica Group putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog (LOC4337724), mRNA putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog(LOC4337724) coding protein psRNATarget