Search result

BaseInfo

ncRNA ID osa-miRf11292-npr
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 20
Mature sequence(if miRNA) NA - UUAAGUGGUCCGCCUGCGAA - NA
Stem-loop(if miRNA) GGAUU      A         A    GUU   G        U
     UUUGCA GCGGACCAC UAAG   CGC UGUGAAAA A
     |||||| ||||||||| ||||   ||| ||||||||
     AAGCGU CGCCUGGUG AUUU   GCG ACGCUUUU G
CAGGC      C         A    GCC   A        A
Stem-loop sequence GGAUUUUUGCAAGCGGACCACAUAAGGUUCGCGUGUGAAAAUAGAUUUUCGCAAGCGCCGUUUAAGUGGUCCGCCUGCGAACGGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK120802.1
ncRNA:20   AAGCGUCCGCCUGGUGAAUU   1
  *|||||||||||||||||||
targets:490   AUCGCAGGCGGACCACUUAA   509

0.0 Oryza sativa Japonica Group cDNA clone:J023013A15, full insert sequence NA coding protein psRNATarget
LQ236078.1
ncRNA:20   AAGCGUCCGCCUGGUGAAUU   1
  ||||||||||||||||*|||
targets:10   UUCGCAGGCGGACCACAUAA   29

1.5 Sequence 2073 from Patent EP2985353 NA coding protein psRNATarget
HI403948.1
ncRNA:20   AAGCGUCCGCCUGGUGAAUU   1
  ||||||||||||||||*|||
targets:10   UUCGCAGGCGGACCACAUAA   29

1.5 Sequence 2073 from Patent EP2074227 NA coding protein psRNATarget
JB164409.1
ncRNA:20   AAGCGUCCGCCUGGUGAAUU   1
  ||||||||||||||||*|||
targets:10   UUCGCAGGCGGACCACAUAA   29

1.5 Sequence 2073 from Patent EP2559767 NA coding protein psRNATarget
LQ235978.1
ncRNA:20   AAGCGUCCGCCUGGUGAAUU   1
  ||=*=|||||||||||||||
targets:11   UUUUUAGGCGGACCACUUAA   30

3.0 Sequence 1973 from Patent EP2985353 NA coding protein psRNATarget
JB164309.1
ncRNA:20   AAGCGUCCGCCUGGUGAAUU   1
  ||=*=|||||||||||||||
targets:11   UUUUUAGGCGGACCACUUAA   30

3.0 Sequence 1973 from Patent EP2559767 NA coding protein psRNATarget
HI403848.1
ncRNA:20   AAGCGUCCGCCUGGUGAAUU   1
  ||=*=|||||||||||||||
targets:11   UUUUUAGGCGGACCACUUAA   30

3.0 Sequence 1973 from Patent EP2074227 NA coding protein psRNATarget
AK288572.1
ncRNA:20   AAGCGUCCGCCUGGUGAAUU   1
  *|=|||||||||||||*|||
targets:2543   AUUGCAGGCGGACCACAUAA   2562

2.5 Oryza sativa Japonica Group cDNA, clone: J090048G20, full insert sequence NA coding protein psRNATarget