Search result

BaseInfo

ncRNA ID	osa-miRf11267-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	21
Mature sequence(if miRNA)	NA - GACGACGACGAACUUGCCCUU - NA
Stem-loop(if miRNA)	-         AG   GCA   A      - CC -   A    AUGU    GA GC UCGAGAGGG  GAG   GUC UCGUCC C  C UCG CCUC    UGGC  A || |||||||||  |||   ||| |||||| |  | ||| ||||    |||| CG AGCUCUUCC  UUC   CAG AGCAGG G  G AGC GGAG    GCUG  G   C         CG   AAG   C      U CC U   -    ----    AG
Stem-loop sequence	GCUCGAGAGGGAGGAGGCAGUCAUCGUCCCCCCUCGACCUCAUGUUGGCGAAGGAGUCGGAGGCGAUGCCGUGGACGACGACGAACUUGCCCUUCUCGACGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015794978.1	ncRNA:21   UUCCCGUUCAAGCAGCAGCAG   1   ||||||||||||||||||||| targets:992   AAGGGCAAGUUCGUCGUCGUC   1012 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group photosynthetic NDH subunit of subcomplex B 1, chloroplastic (LOC4345153), mRNA	photosynthetic NDH subunit of subcomplex B 1, chloroplastic(LOC4345153)	coding protein	psRNATarget
AK105984.1	ncRNA:21   UUCCCGUUCAAGCAGCAGCAG   1   ||||||||||||||||||||| targets:935   AAGGGCAAGUUCGUCGUCGUC   955 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:001-205-G04, full insert sequence	NA	coding protein	psRNATarget
AK068157.1	ncRNA:21   UUCCCGUUCAAGCAGCAGCAG   1   ||||||||||||||||||||| targets:939   AAGGGCAAGUUCGUCGUCGUC   959 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013134G12, full insert sequence	NA	coding protein	psRNATarget
AK104325.1	ncRNA:21   UUCCCGUUCAAGCAGCAGCAG   1   ||||||||||||||||||||| targets:935   AAGGGCAAGUUCGUCGUCGUC   955 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:001-027-H10, full insert sequence	NA	coding protein	psRNATarget
XM_015783217.1	ncRNA:21   UUCCCGUUCAAGCAGCAGCAG   1   =|||||=|||||||||*|||| targets:7   GAGGGCGAGUUCGUCGACGUC   27 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group oligopeptide transporter 4-like (LOC107275370), mRNA	oligopeptide transporter 4-like(LOC107275370)	coding protein	psRNATarget
XM_015793698.1	ncRNA:21   UUCCCGUUCAAGCAGCAGCAG   1   =|*|||==||||||||||||| targets:355   GACGGCGGGUUCGUCGUCGUC   375 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group reticuline oxidase-like (LOC107275898), mRNA	reticuline oxidase-like(LOC107275898)	coding protein	psRNATarget
AK110458.1	ncRNA:21   UUCCCGUUCAAGCAGCAGCAG   1   =**||||||||||||*||||| targets:2374   GCCGGCAAGUUCGUCAUCGUC   2394 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-166-F06, full insert sequence	NA	coding protein	psRNATarget
XM_015765221.1	ncRNA:21   UUCCCGUUCAAGCAGCAGCAG   1   **|**|||||||||||||||| targets:885   CCGUUCAAGUUCGUCGUCGUC   905 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group probable purple acid phosphatase 20 (LOC4351517), mRNA	probable purple acid phosphatase 20(LOC4351517)	coding protein	psRNATarget
AK107301.1	ncRNA:21   UUCCCGUUCAAGCAGCAGCAG   1   **|**|||||||||||||||| targets:508   CCGUUCAAGUUCGUCGUCGUC   528 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-126-C09, full insert sequence	NA	coding protein	psRNATarget