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BaseInfo

ncRNA ID ath-miRf10172-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 23
Mature sequence(if miRNA) NA - UACUCGACCAGGGGGUCGAGUGG - NA
Stem-loop(if miRNA) AUGAA G         A G          G   GAU    UGAA   G       G A   GAUGA         A
     G UACUCGACC U UGGUUGAGUA UGU   CGAG    GGU AUUUGGU G CGU     UACUCGACC G
     | ||||||||| | |||||||||| |||   ||||    ||| ||||||| | |||     |||||||||
     U GUGAGCUGG G ACCAGCUCAU GCG   GUUC    UUA UAAACUA U GUA     GUGAGCUGG G
UGUUG G         G G          G   ---    --UG   G       G -   -----         A
Stem-loop sequence AUGAAGGUACUCGACCAUGUGGUUGAGUAGUGUGAUCGAGUGAAGGUGAUUUGGUGGACGUGAUGAUACUCGACCAGGAGGUCGAGUGAUGUGAUCAAAUGAUUGUCUUGGCGGUACUCGACCAGGGGGUCGAGUGGUGUUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
DQ069808.1
ncRNA:23   GGUGAGCUGGGGGACCAGCUCAU   1
  |||||||||||||||||||||||
targets:90   CCACUCGACCCCCUGGUCGAGUA   112

0.0 Arabidopsis thaliana At2g10880 mRNA, partial sequence NA coding protein psRNATarget
BT014714.1
ncRNA:23   GGUGAGCUGGGGGACCAGCUCAU   1
  |||||||||||||||||||||||
targets:230   CCACUCGACCCCCUGGUCGAGUA   252

0.0 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget
BT014714.1
ncRNA:23   GGUGAGCUGGGGGACCAGCUCAU   1
  |=|||||||||||||||||||||
targets:181   CUACUCGACCCCCUGGUCGAGUA   203

0.0 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget
BT015478.1
ncRNA:23   GGUGAGCUGGGGGACCAGCUCAU   1
  |||||||||||||||||||||||
targets:230   CCACUCGACCCCCUGGUCGAGUA   252

0.0 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget
BT015478.1
ncRNA:23   GGUGAGCUGGGGGACCAGCUCAU   1
  |=|||||||||||||||||||||
targets:181   CUACUCGACCCCCUGGUCGAGUA   203

0.0 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget
EF183192.1
ncRNA:23   GGUGAGCUGGGGGACCAGCUCAU   1
  |||||||||||||||||||||||
targets:124   CCACUCGACCCCCUGGUCGAGUA   146

0.0 Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence NA coding protein psRNATarget
EF183193.1
ncRNA:23   GGUGAGCUGGGGGACCAGCUCAU   1
  |||||||||||||||||||||||
targets:499   CCACUCGACCCCCUGGUCGAGUA   521

0.0 Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence NA coding protein psRNATarget
EF183191.1
ncRNA:23   GGUGAGCUGGGGGACCAGCUCAU   1
  |||||||||||||||||||||||
targets:499   CCACUCGACCCCCUGGUCGAGUA   521

0.0 Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence NA coding protein psRNATarget
EF183042.1
ncRNA:23   GGUGAGCUGGGGGACCAGCUCAU   1
  =||||||||||||||||||||||
targets:1571   UCACUCGACCCCCUGGUCGAGUA   1593

0.0 Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence NA coding protein psRNATarget
BT025674.1
ncRNA:23   GGUGAGCUGGGGGACCAGCUCAU   1
  ==|||||||||||||||||||||
targets:308   UUACUCGACCCCCUGGUCGAGUA   330

0.0 Arabidopsis thaliana NA coding protein psRNATarget
BT014714.1
ncRNA:23   GGUGAGCUGGGGGACCAGCUCAU   1
  ==||||*||||||||||||||||
targets:301   UUACUCAACCCCCUGGUCGAGUA   323

1.0 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget
BT015478.1
ncRNA:23   GGUGAGCUGGGGGACCAGCUCAU   1
  ==||||*||||||||||||||||
targets:301   UUACUCAACCCCCUGGUCGAGUA   323

1.0 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget
AY231407.1
ncRNA:23   GGUGAGCUGGGGGACCAGCUCAU   1
  ==||*||||||||||||||||||
targets:583   UUACYCGACCCCCUGGUCGAGUA   605

1.0 Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds NA coding protein psRNATarget
BT025674.1
ncRNA:23   GGUGAGCUGGGGGACCAGCUCAU   1
  |=|||||||||||*|||||||||
targets:187   CUACUCGACCCCCAGGUCGAGUA   209

1.5 Arabidopsis thaliana NA coding protein psRNATarget
AY231407.1
ncRNA:23   GGUGAGCUGGGGGACCAGCUCAU   1
  ||||||||||||*||||||||||
targets:489   CCACUCGACCCCGUGGUCGAGUA   511

1.5 Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds NA coding protein psRNATarget
AY231407.1
ncRNA:23   GGUGAGCUGGGGGACCAGCUCAU   1
  ||||||||||||*||||||||||
targets:535   CCACUCGACCCCAUGGUCGAGUA   557

1.5 Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds NA coding protein psRNATarget
NM_103391.1
ncRNA:23   GGUGAGCUGGGGGACCAGCUCAU   1
  |||||||||||||*|||||||||
targets:1104   CCACUCGACCCCCAGGUCGAGUA   1126

1.5 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
BT014714.1
ncRNA:23   GGUGAGCUGGGGGACCAGCUCAU   1
  *=|||||||||||*||||||||=
targets:136   AUACUCGACCCCCAGGUCGAGUG   158

2.5 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget
BT015478.1
ncRNA:23   GGUGAGCUGGGGGACCAGCUCAU   1
  *=|||||||||||*||||||||=
targets:136   AUACUCGACCCCCAGGUCGAGUG   158

2.5 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget
EF183192.1
ncRNA:23   GGUGAGCUGGGGGACCAGCUCAU   1
  |||*||*|||||*||||||||||
targets:169   CCAGUCAACCCCGUGGUCGAGUA   191

2.5 Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence NA coding protein psRNATarget
EF183193.1
ncRNA:23   GGUGAGCUGGGGGACCAGCUCAU   1
  |||*||*|||||*||||||||||
targets:544   CCAGUCAACCCCGUGGUCGAGUA   566

2.5 Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence NA coding protein psRNATarget
EF183191.1
ncRNA:23   GGUGAGCUGGGGGACCAGCUCAU   1
  |||*||*|||||*||||||||||
targets:544   CCAGUCAACCCCGUGGUCGAGUA   566

2.5 Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence NA coding protein psRNATarget
NM_103391.1
ncRNA:23   GGUGAGCUGGGGGACCAGCUCAU   1
  ||||||||||||*|||||||||=
targets:1209   CCACUCGACCCCGUGGUCGAGUG   1231

2.5 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
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