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BaseInfo

ncRNA ID osa-miRf11233-npr
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 21
Mature sequence(if miRNA) NA - UAAUGCCCGUCACAGAUGAGU - NA
Stem-loop(if miRNA)    GACC                       AUAA    UCAC     A
GAU    CUUAUCUGUGACGGGUAUUAACU    CCCG    AGAUG U
|||    |||||||||||||||||||||||    ||||    ||||| C
CUA    GAGUAGACACUGCCCGUAAUUGA    GGGC    UCUAC C
   AUAU                       AUCC    UAAC     U
Stem-loop sequence GAUGACCCUUAUCUGUGACGGGUAUUAACUAUAACCCGUCACAGAUGAUCCUCAUCUCAAUCGGGCCUAAGUUAAUGCCCGUCACAGAUGAGUAUAAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288447.1
ncRNA:21   UGAGUAGACACUGCCCGUAAU   1
  |*|||||*|||||||||||||
targets:425   AGUCAUCGGUGACGGGCAUUA   445

1.0 Oryza sativa Japonica Group cDNA, clone: J090034N03, full insert sequence NA coding protein psRNATarget
LQ235984.1
ncRNA:21   UGAGUAGACACUGCCCGUAAU   1
  ||*=|||*|||||||||||||
targets:15   ACCUAUCCGUGACGGGCAUUA   35

3.0 Sequence 1979 from Patent EP2985353 NA coding protein psRNATarget
HI403854.1
ncRNA:21   UGAGUAGACACUGCCCGUAAU   1
  ||*=|||*|||||||||||||
targets:15   ACCUAUCCGUGACGGGCAUUA   35

3.0 Sequence 1979 from Patent EP2074227 NA coding protein psRNATarget
JB164315.1
ncRNA:21   UGAGUAGACACUGCCCGUAAU   1
  ||*=|||*|||||||||||||
targets:15   ACCUAUCCGUGACGGGCAUUA   35

3.0 Sequence 1979 from Patent EP2559767 NA coding protein psRNATarget
AK107543.1
ncRNA:21   UGAGUAGACACUGCCCGUAAU   1
  =||||||*|||||||||*|||
targets:1502   GCUCAUCGGUGACGGGCUUUA   1522

2.5 Oryza sativa Japonica Group cDNA clone:002-129-H11, full insert sequence NA coding protein psRNATarget