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BaseInfo

ncRNA ID ath-miRf10171-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 25
Mature sequence(if miRNA) NA - GCGGUACUCGACCAGGGGGUCGAGU - NA
Stem-loop(if miRNA) AUGAA G         A G          G   GAU    UGAA   G       G A   GAUGA         A
     G UACUCGACC U UGGUUGAGUA UGU   CGAG    GGU AUUUGGU G CGU     UACUCGACC G
     | ||||||||| | |||||||||| |||   ||||    ||| ||||||| | |||     |||||||||
     U GUGAGCUGG G ACCAGCUCAU GCG   GUUC    UUA UAAACUA U GUA     GUGAGCUGG G
UGUUG G         G G          G   ---    --UG   G       G -   -----         A
Stem-loop sequence AUGAAGGUACUCGACCAUGUGGUUGAGUAGUGUGAUCGAGUGAAGGUGAUUUGGUGGACGUGAUGAUACUCGACCAGGAGGUCGAGUGAUGUGAUCAAAUGAUUGUCUUGGCGGUACUCGACCAGGGGGUCGAGUGGUGUUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT025674.1
ncRNA:25   UGAGCUGGGGGACCAGCUCAUGGCG   1
  |||||||||||||||||||||=||=
targets:310   ACUCGACCCCCUGGUCGAGUAUCGU   334

2.5 Arabidopsis thaliana NA coding protein psRNATarget
AY231407.1
ncRNA:25   UGAGCUGGGGGACCAGCUCAUGGCG   1
  ||||||||||*||||||||||||*|
targets:537   ACUCGACCCCAUGGUCGAGUACCAC   561

2.5 Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds NA coding protein psRNATarget