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BaseInfo

ncRNA ID osa-miRf11229-npr
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 25
Mature sequence(if miRNA) NA - AGUCCCGGUUGGUAACACGAACCGG - NA
Stem-loop(if miRNA) UUUU         G  AAC  A                -  U UG    GC
    GUCCCGGUU GU   AC AACCGGGACUAAAGAU GG U  GCCG  C
    ||||||||| ||   || |||||||||||||||| || |  ||||
    CAGGGCCAA CA   UG UUGGCCCUGAUUUCUA CC A  CGGU  A
AAAU         G  CAA  G                G  - GU    GC
Stem-loop sequence UUUUGUCCCGGUUGGUAACACAAACCGGGACUAAAGAUGGUUUGGCCGGCCACGUGGCUGACCGAUCUUUAGUCCCGGUUGGUAACACGAACCGGGACUAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015758314.1
ncRNA:25   GGCCAAGCACAAUGGUUGGCCCUGA   1
  ||||||=||||||||||||||||||
targets:917   CCGGUUUGUGUUACCAACCGGGACU   941

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278346 (LOC107278346), transcript variant X1, mRNA uncharacterized LOC107278346(LOC107278346) coding protein psRNATarget
AK288424.1
ncRNA:25   GGCCAAGCACAAUGGUUGGCCCUGA   1
  ||||||*||||||||||||||||||
targets:2392   CCGGUUAGUGUUACCAACCGGGACU   2416

1.0 Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence NA coding protein psRNATarget
AK288424.1
ncRNA:25   GGCCAAGCACAAUGGUUGGCCCUGA   1
  ||||||*||**||||||||||||||
targets:1380   CCGGUUGGUAAUACCAACCGGGACU   1404

3.0 Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence NA coding protein psRNATarget
HI404518.1
ncRNA:25   GGCCAAGCACAAUGGUUGGCCCUGA   1
  ||||||*|||*||||||||||||||
targets:54   CCGGUUGGUGCUACCAACCGGGACU   78

2.0 Sequence 2643 from Patent EP2074227 NA coding protein psRNATarget
JB164979.1
ncRNA:25   GGCCAAGCACAAUGGUUGGCCCUGA   1
  ||||||*|||*||||||||||||||
targets:54   CCGGUUGGUGCUACCAACCGGGACU   78

2.0 Sequence 2643 from Patent EP2559767 NA coding protein psRNATarget
LQ236648.1
ncRNA:25   GGCCAAGCACAAUGGUUGGCCCUGA   1
  ||||||*|||*||||||||||||||
targets:54   CCGGUUGGUGCUACCAACCGGGACU   78

2.0 Sequence 2643 from Patent EP2985353 NA coding protein psRNATarget
AK288377.1
ncRNA:25   GGCCAAGCACAAUGGUUGGCCCUGA   1
  ||||||*||||||||||||*|||||
targets:1387   CCGGUUGGUGUUACCAACCUGGACU   1411

2.5 Oryza sativa Japonica Group cDNA, clone: J090026K06, full insert sequence NA coding protein psRNATarget
AK289098.1
ncRNA:25   GGCCAAGCACAAUGGUUGGCCCUGA   1
  ||||||*||*|||||||||||||||
targets:115   CCGGUUGGUUUUACCAACCGGGACU   139

2.0 Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence NA coding protein psRNATarget
AK289098.1
ncRNA:25   GGCCAAGCACAAUGGUUGGCCCUGA   1
  ||||||*||||||||||||||||*|
targets:158   CCGGUUGGUGUUACCAACCGGGAGU   182

2.5 Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence NA coding protein psRNATarget
AK288796.1
ncRNA:25   GGCCAAGCACAAUGGUUGGCCCUGA   1
  ||||||*||||||||||||||*|||
targets:1841   CCGGUUGGUGUUACCAACCGGAACU   1865

2.5 Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence NA coding protein psRNATarget
AK288405.1
ncRNA:25   GGCCAAGCACAAUGGUUGGCCCUGA   1
  ||*|||*||||||||||||||||||
targets:2399   CCCGUUGGUGUUACCAACCGGGACU   2423

1.0 Oryza sativa Japonica Group cDNA, clone: J090030E11, full insert sequence NA coding protein psRNATarget
AK288624.1
ncRNA:25   GGCCAAGCACAAUGGUUGGCCCUGA   1
  ||||||*||||||||||||*|||||
targets:4964   CCGGUUAGUGUUACCAACCAGGACU   4988

2.5 Oryza sativa Japonica Group cDNA, clone: J090054H14, full insert sequence NA coding protein psRNATarget
AK288463.1
ncRNA:25   GGCCAAGC-ACAAUGGUUGGCCCUGA   1
  *|**|||*-|||||||||||||||||
targets:454   GCCAUUCUAUGUUACCAACCGGGACU   479

3.0 Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence NA coding protein psRNATarget
AK061057.1
ncRNA:25   GGCCAAGCACAAUGGUUGGCCCUGA   1
  ==||||*||**||||||||||||||
targets:364   UUGGUUGGUAAUACCAACCGGGACU   388

3.0 Oryza sativa Japonica Group cDNA clone:006-205-H07, full insert sequence NA coding protein psRNATarget
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