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BaseInfo

ncRNA ID	osa-miRf11220-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	24
Mature sequence(if miRNA)	NA - CCGGUUGGUAACACCAACCGGGAA - NA
Stem-loop(if miRNA)	AC         A                      U GCUUU  UCCCGGUUG UGUUACCAACCGGGACUAAAGA U |||||  ||||||||| |||||||||||||||||||||| UGAAA  AGGGCCAAC ACAAUGGUUGGCCCUGAUUUUU U      AA         C                      A
Stem-loop sequence	GCUUUACUCCCGGUUGAUGUUACCAACCGGGACUAAAGAUUUAUUUUUAGUCCCGGUUGGUAACACCAACCGGGAAAAAAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK289098.1	ncRNA:24   AAGGGCCAACCACAAUGGUUGGCC   1   *||||||||||||||||||||||| targets:155   GUCCCGGUUGGUGUUACCAACCGG   178 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK289098.1	ncRNA:24   AAGGGCCAACCACAAUGGUUGGCC   1   *|||||||||||*||||||||||| targets:112   CUCCCGGUUGGUUUUACCAACCGG   135 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK288796.1	ncRNA:24   AAGGGCCAACCACAAUGGUUGGCC   1   *||||||||||||||||||||||| targets:1838   GUCCCGGUUGGUGUUACCAACCGG   1861 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
AK288377.1	ncRNA:24   AAGGGCCAACCACAAUGGUUGG-CC   1   *|||||||||||||||||||||-|| targets:1384   GUCCCGGUUGGUGUUACCAACCUGG   1408 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090026K06, full insert sequence	NA	coding protein	psRNATarget
XM_015758314.1	ncRNA:24   AAGGGCCAACCACAAUGGUUGGCC   1   *||||||||*|||||||||||||| targets:914   GUCCCGGUUUGUGUUACCAACCGG   937 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278346 (LOC107278346), transcript variant X1, mRNA	uncharacterized LOC107278346(LOC107278346)	coding protein	psRNATarget
XM_015755226.1	ncRNA:24   AAGGGCCAACCACAAUGGUUGGCC   1   *|||||||||*||||||||||||| targets:78   GUCCCGGUUGAUGUUACCAACCGG   101 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278786 (LOC107278786), mRNA	uncharacterized LOC107278786(LOC107278786)	coding protein	psRNATarget
AK288424.1	ncRNA:24   AAGGGCCAACCACAAUGGUUGGCC   1   *||||||||*|||||||||||||| targets:2389   GUCCCGGUUAGUGUUACCAACCGG   2412 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK288405.1	ncRNA:24   AAGGGCCAACCACAAUGGUUGGCC   1   *||||*|||||||||||||||||| targets:2396   GUCCCCGUUGGUGUUACCAACCGG   2419 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090030E11, full insert sequence	NA	coding protein	psRNATarget
HI404518.1	ncRNA:24   AA---GGGCCAACCACAAUGGUUGGCC   1   ||---|||||||||||*|||||||||| targets:48   UUAGCCCCGGUUGGUGCUACCAACCGG   74 Target Full Sequence	1.5	Sequence 2643 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236648.1	ncRNA:24   AA---GGGCCAACCACAAUGGUUGGCC   1   ||---|||||||||||*|||||||||| targets:48   UUAGCCCCGGUUGGUGCUACCAACCGG   74 Target Full Sequence	1.5	Sequence 2643 from Patent EP2985353	NA	coding protein	psRNATarget
JB164979.1	ncRNA:24   AA---GGGCCAACCACAAUGGUUGGCC   1   ||---|||||||||||*|||||||||| targets:48   UUAGCCCCGGUUGGUGCUACCAACCGG   74 Target Full Sequence	1.5	Sequence 2643 from Patent EP2559767	NA	coding protein	psRNATarget
HI404286.1	ncRNA:24   AAGGGCCAACCACAAUGGUUGGCC   1   *||=||*||||||||||||||=|| targets:2   GUCUCGAUUGGUGUUACCAACUGG   25 Target Full Sequence	2.5	Sequence 2411 from Patent EP2074227	NA	coding protein	psRNATarget
JB164747.1	ncRNA:24   AAGGGCCAACCACAAUGGUUGGCC   1   *||=||*||||||||||||||=|| targets:2   GUCUCGAUUGGUGUUACCAACUGG   25 Target Full Sequence	2.5	Sequence 2411 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236416.1	ncRNA:24   AAGGGCCAACCACAAUGGUUGGCC   1   *||=||*||||||||||||||=|| targets:2   GUCUCGAUUGGUGUUACCAACUGG   25 Target Full Sequence	2.5	Sequence 2411 from Patent EP2985353	NA	coding protein	psRNATarget
AK119916.1	ncRNA:24   AAGGGCCAACCACAAUGGUUGGCC   1   *||=||||||*||||||=|||||| targets:372   GUCUCGGUUGAUGUUACUAACCGG   395 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-183-F10, full insert sequence	NA	coding protein	psRNATarget
AK065811.1	ncRNA:24   AAG----GGCCAACCACAAUGGUUGGCC   1   ||=----||||||*||||||=||||||| targets:1169   UUUAGCACCGGUUUGUGUUAUCAACCGG   1196 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013039F07, full insert sequence	NA	coding protein	psRNATarget