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BaseInfo

ncRNA ID ath-miRf10169-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 21
Mature sequence(if miRNA) NA - UACUCGACCAGUGGGUCGAGU - NA
Stem-loop(if miRNA)       G GU            GAAAUGGA  - G  G -  AA -    CAU   -     GUA   G GUGAUAGAGAUGGUGGUACUCGGCUUGGUGGUAGAGUGAUCGAGUGAAGGUGAUGAAGGUACUCGA
GCUUGA U  CUGGUUGAGUGC        GA U AU C UG  G CUAG   CCG AGUAU   GUC A                                                                  C
|||||| |  ||||||||||||        || | || | ||  | ||||   ||| |||||   ||| |                                                                  C
UGAGCU G  GACCAGCUCAUG        CG U UC U UU  A UGAG   CUA UGUAG   UGA G                                                                  A
      G GU            -------G  G -  - G  -- G    ---   G     ---   - CUGGGGGACCAGUUCAUAGUAGUGCAGGUGGUUUAGUGGAAGUGAGCUAGUGUGAUGAGCUGGUGU
Stem-loop sequence GCUUGAGUGUCUGGUUGAGUGCGAAAUGGAGAUGAUGCUGAAGCUAGCAUCCGAGUAUGUAGUCGAGUGAUAGAGAUGGUGGUACUCGGCUUGGUGGUAGAGUGAUCGAGUGAAGGUGAUGAAGGUACUCGACCAUGUGGUCGAGUAGUGUGAUCGAGUGAAGGUGAUUUGGUGGACGUGAUGAUACUUGACCAGGGGGUCGAGUGAUGUGAUCGAGUGAUUGUCUUGGCGGUACUCGACCAGUGGGUCGAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT025674.1
ncRNA:21   UGAGCUGGGUGACCAGCUCAU   1
  |||||||||*|||||||||||
targets:310   ACUCGACCCCCUGGUCGAGUA   330

1.5 Arabidopsis thaliana NA coding protein psRNATarget
DQ069808.1
ncRNA:21   UGAGCUGGGUGACCAGCUCAU   1
  |||||||||*|||||||||||
targets:92   ACUCGACCCCCUGGUCGAGUA   112

1.5 Arabidopsis thaliana At2g10880 mRNA, partial sequence NA coding protein psRNATarget
BT014714.1
ncRNA:21   UGAGCUGGGUGACCAGCUCAU   1
  |||||||||*|||||||||||
targets:183   ACUCGACCCCCUGGUCGAGUA   203

1.5 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget
BT014714.1
ncRNA:21   UGAGCUGGGUGACCAGCUCAU   1
  |||||||||*|||||||||||
targets:232   ACUCGACCCCCUGGUCGAGUA   252

1.5 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget
BT015478.1
ncRNA:21   UGAGCUGGGUGACCAGCUCAU   1
  |||||||||*|||||||||||
targets:183   ACUCGACCCCCUGGUCGAGUA   203

1.5 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget
BT015478.1
ncRNA:21   UGAGCUGGGUGACCAGCUCAU   1
  |||||||||*|||||||||||
targets:232   ACUCGACCCCCUGGUCGAGUA   252

1.5 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget
EF183192.1
ncRNA:21   UGAGCUGGGUGACCAGCUCAU   1
  |||||||||*|||||||||||
targets:126   ACUCGACCCCCUGGUCGAGUA   146

1.5 Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence NA coding protein psRNATarget
EF183193.1
ncRNA:21   UGAGCUGGGUGACCAGCUCAU   1
  |||||||||*|||||||||||
targets:501   ACUCGACCCCCUGGUCGAGUA   521

1.5 Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence NA coding protein psRNATarget
EF183191.1
ncRNA:21   UGAGCUGGGUGACCAGCUCAU   1
  |||||||||*|||||||||||
targets:501   ACUCGACCCCCUGGUCGAGUA   521

1.5 Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence NA coding protein psRNATarget
EF183042.1
ncRNA:21   UGAGCUGGGUGACCAGCUCAU   1
  |||||||||*|||||||||||
targets:1573   ACUCGACCCCCUGGUCGAGUA   1593

1.5 Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence NA coding protein psRNATarget
BT014714.1
ncRNA:21   UGAGCUGGGUGACCAGCUCAU   1
  ||||*||||*|||||||||||
targets:303   ACUCAACCCCCUGGUCGAGUA   323

2.5 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget
BT015478.1
ncRNA:21   UGAGCUGGGUGACCAGCUCAU   1
  ||||*||||*|||||||||||
targets:303   ACUCAACCCCCUGGUCGAGUA   323

2.5 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget
AY231407.1
ncRNA:21   UGAGCUGGGUGACCAGCUCAU   1
  ||*||||||*|||||||||||
targets:585   ACYCGACCCCCUGGUCGAGUA   605

2.5 Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds NA coding protein psRNATarget