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BaseInfo

ncRNA ID	osa-miRf11197-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	22
Mature sequence(if miRNA)	NA - CGUGGACGAAUCUCGGACGUCC - NA
Stem-loop(if miRNA)	A               A           CG        -U      - A  -  U AUCGAAAAAU GACGUUCGAGAUUCG CCACGUCAUCA  AGUAAAAA  UUUACU C UA GA U |||||||||| ||||||||||||||| |||||||||||  ||||||||  |||||| | || || U UAGCUUUUUA CUGCAGGCUCUAAGC GGUGCAGUAGU  UCAUUUUU  AAAUGA G AU CU A           C               A           AA        UU      U A  A  U
Stem-loop sequence	AUCGAAAAAUAGACGUUCGAGAUUCGACCACGUCAUCACGAGUAAAAAUUUUACUCAUAGAUUUAUUCAUAAGUAGUAAAUUUUUUUACUAAUGAUGACGUGGACGAAUCUCGGACGUCCAUUUUUCGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015789578.1	ncRNA:22   CCUGCAGGCUCUAAGCAGGUGC   1   |||||||||||||||||||||| targets:1808   GGACGUCCGAGAUUCGUCCACG   1829 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group protein SRC2 (LOC9270916), mRNA	protein SRC2(LOC9270916)	coding protein	psRNATarget
XM_015763997.1	ncRNA:22   CCUGCAGGCUCUAAGCAGGUGC   1   ||||||=||||||||||||||| targets:836   GGACGUUCGAGAUUCGUCCACG   857 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group chitinase-like protein 2 (LOC107279727), mRNA	chitinase-like protein 2(LOC107279727)	coding protein	psRNATarget
HI404362.1	ncRNA:22   CCUGCAGGCUCUAAGCAGGUGC   1   ||||||=|||||||=||||||| targets:4   GGACGUUCGAGAUUUGUCCACG   25 Target Full Sequence	2.5	Sequence 2487 from Patent EP2074227	NA	coding protein	psRNATarget
JB164823.1	ncRNA:22   CCUGCAGGCUCUAAGCAGGUGC   1   ||||||=|||||||=||||||| targets:4   GGACGUUCGAGAUUUGUCCACG   25 Target Full Sequence	2.5	Sequence 2487 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236492.1	ncRNA:22   CCUGCAGGCUCUAAGCAGGUGC   1   ||||||=|||||||=||||||| targets:4   GGACGUUCGAGAUUUGUCCACG   25 Target Full Sequence	2.5	Sequence 2487 from Patent EP2985353	NA	coding protein	psRNATarget
AK288313.1	ncRNA:22   CCUGCAGGCUCUAAGCAGGUGC   1   ||||||=||||||||*|||||| targets:3561   GGACGUUCGAGAUUCAUCCACG   3582 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090021D10, full insert sequence	NA	coding protein	psRNATarget
XM_015787760.1	ncRNA:22   CCUGCAGGCUCUAAGCAGGUGC   1   **||*||||||=|||||||||| targets:1462   AUACCUCCGAGGUUCGUCCACG   1483 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ent-kaurene oxidase-like 3 (LOC4341347), transcript variant X1, mRNA	ent-kaurene oxidase-like 3(LOC4341347)	coding protein	psRNATarget
XM_015787764.1	ncRNA:22   CCUGCAGGCUCUAAGCAGGUGC   1   **||*||||||=|||||||||| targets:1228   AUACCUCCGAGGUUCGUCCACG   1249 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ent-kaurene oxidase-like 3 (LOC4341347), transcript variant X5, mRNA	ent-kaurene oxidase-like 3(LOC4341347)	coding protein	psRNATarget
XM_015787761.1	ncRNA:22   CCUGCAGGCUCUAAGCAGGUGC   1   **||*||||||=|||||||||| targets:1227   AUACCUCCGAGGUUCGUCCACG   1248 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ent-kaurene oxidase-like 3 (LOC4341347), transcript variant X2, mRNA	ent-kaurene oxidase-like 3(LOC4341347)	coding protein	psRNATarget
XM_015787762.1	ncRNA:22   CCUGCAGGCUCUAAGCAGGUGC   1   **||*||||||=|||||||||| targets:1219   AUACCUCCGAGGUUCGUCCACG   1240 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ent-kaurene oxidase-like 3 (LOC4341347), transcript variant X3, mRNA	ent-kaurene oxidase-like 3(LOC4341347)	coding protein	psRNATarget
AK066285.1	ncRNA:22   CCUGCAGGCUCUAAGCAGGUGC   1   **||*||||||=|||||||||| targets:1223   AUACCUCCGAGGUUCGUCCACG   1244 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013068N08, full insert sequence	NA	coding protein	psRNATarget
AY660665.1	ncRNA:22   CCUGCAGGCUCUAAGCAGGUGC   1   **||*||||||=|||||||||| targets:1151   AUACCUCCGAGGUUCGUCCACG   1172 Target Full Sequence	2.5	Oryza sativa (japonica cultivar-group) isolate KO3 ent-kaurene oxidase mRNA, complete cds	NA	coding protein	psRNATarget
XM_015755494.1	ncRNA:22   CCUGCAGGCUCUAAGCAGGUGC   1   |*||||*||||||||||||||* targets:449   GAACGUACGAGAUUCGUCCACU   470 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277973 (LOC107277973), transcript variant X1, mRNA	uncharacterized LOC107277973(LOC107277973)	coding protein	psRNATarget
AK288582.1	ncRNA:22   CCUGCAGGCUCUAAGCAGGUGC   1   |*||*||||||||||*|||||| targets:85   GUACAUCCGAGAUUCAUCCACG   106 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090049I19, full insert sequence	NA	coding protein	psRNATarget