Search result

BaseInfo

ncRNA ID	osa-miRf11183-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - ACGUCGGAGGAUCCUCUUCC - NA
Stem-loop(if miRNA)	AAA      UU         UA       G - AGAGGA       G     GAUA   AC    CC ACUG   UAGGGA  GGGAUCCUC  ACGUGAA U C      ACGUGGU ACUGA    UGG  CCCG  G ||||   ||||||  |||||||||  ||||||| | |      ||||||| |||||    |||  ||||  C UGAU   GUCCCU  UCCUAGGAG  UGCACUU A G      UGCACUA UGACU    ACC  GGGC  U     AAA      UC         GC       G U GGAGAA       G     GACC   -C    AC
Stem-loop sequence	ACUGAAAUAGGGAUUGGGAUCCUCUAACGUGAAGUCAGAGGAACGUGGUGACUGAGAUAUGGACCCCGCCGCUCACGGGCCCACCAGUCAGUGAUCACGUAAGAGGGUAGUUCACGUCGGAGGAUCCUCUUCCCUGAAAUAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015791876.1	ncRNA:20   CCUUCUCCUAGGAGGCUGCA   1   |||||||||||||||||||| targets:580   GGAAGAGGAUCCUCCGACGU   599 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group vestitone reductase (LOC4343822), transcript variant X2, mRNA	vestitone reductase(LOC4343822)	coding protein	psRNATarget
AK104480.1	ncRNA:20   CCUUCUCCUAGGAGGCUGCA   1   |||||*|||||||||*|||| targets:972   GGAAGCGGAUCCUCCAACGU   991 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:006-301-G04, full insert sequence	NA	coding protein	psRNATarget
AK061459.1	ncRNA:20   CCUUCUCCUAGGAGGCUGCA   1   |||||*|||||||||*|||| targets:974   GGAAGCGGAUCCUCCAACGU   993 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:006-308-A03, full insert sequence	NA	coding protein	psRNATarget
XM_015770157.1	ncRNA:20   CCUUCUCCUAGGAGGCUGCA   1   |||||*|||||||||*|||| targets:3768   GGAAGCGGAUCCUCCAACGU   3787 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group RING-H2 finger protein ATL3 (LOC4331022), transcript variant X1, mRNA	RING-H2 finger protein ATL3(LOC4331022)	coding protein	psRNATarget
XM_015770158.1	ncRNA:20   CCUUCUCCUAGGAGGCUGCA   1   |||||*|||||||||*|||| targets:3768   GGAAGCGGAUCCUCCAACGU   3787 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group RING-H2 finger protein ATL3 (LOC4331022), transcript variant X2, mRNA	RING-H2 finger protein ATL3(LOC4331022)	coding protein	psRNATarget