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BaseInfo

ncRNA ID osa-miRf11176-npr
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 21
Mature sequence(if miRNA) NA - UAACGCCCGUCACAGAUGAGU - NA
Stem-loop(if miRNA)    --G G               A      AU  C  AUCAC     A
GAU   A UCAUCUGUGACGGGC UUAACU  GG CC     AGAUG C
|||   | ||||||||||||||| ||||||  || ||     ||||| C
CUA   U AGUAGACACUGCCCG AAUUGA  CC GG     UCUAC C
   AUA G               C      AU  A  CUAAC     U
Stem-loop sequence GAUGAGUCAUCUGUGACGGGCAUUAACUAUGGCCCAUCACAGAUGACCCUCAUCUCAAUCGGACCUAAGUUAACGCCCGUCACAGAUGAGUAUAAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288547.1
ncRNA:21   UGAGUAGACACUGCCCGCAAU   1
  |*||||||||||||||||*||
targets:122   AGUCAUCUGUGACGGGCGCUA   142

1.5 Oryza sativa Japonica Group cDNA, clone: J090046I18, full insert sequence NA coding protein psRNATarget
JB164236.1
ncRNA:21   UGAGUAGACACUGCCCGCAAU   1
  ||*=|||*|||||||||||||
targets:15   ACCUAUCCGUGACGGGCGUUA   35

3.0 Sequence 1900 from Patent EP2559767 NA coding protein psRNATarget
HI403775.1
ncRNA:21   UGAGUAGACACUGCCCGCAAU   1
  ||*=|||*|||||||||||||
targets:15   ACCUAUCCGUGACGGGCGUUA   35

3.0 Sequence 1900 from Patent EP2074227 NA coding protein psRNATarget
LQ235905.1
ncRNA:21   UGAGUAGACACUGCCCGCAAU   1
  ||*=|||*|||||||||||||
targets:15   ACCUAUCCGUGACGGGCGUUA   35

3.0 Sequence 1900 from Patent EP2985353 NA coding protein psRNATarget
AK107543.1
ncRNA:21   UGAGUAGACACUGCCCGCAAU   1
  =||||||*|||||||||*|||
targets:1502   GCUCAUCGGUGACGGGCUUUA   1522

2.5 Oryza sativa Japonica Group cDNA clone:002-129-H11, full insert sequence NA coding protein psRNATarget
AK288447.1
ncRNA:21   UGAGUAGACACUGCCCGCAAU   1
  |*|||||*|||||||||*|||
targets:425   AGUCAUCGGUGACGGGCAUUA   445

2.5 Oryza sativa Japonica Group cDNA, clone: J090034N03, full insert sequence NA coding protein psRNATarget