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BaseInfo

ncRNA ID osa-miRf11170-npr
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 20
Mature sequence(if miRNA) NA - UGCAUGCAUCUGCAUGUGCC - NA
Stem-loop(if miRNA) GAGGA   -       GA               AGCU    --------AGACA  C   - CCACAAGUCCUCAUG
     CGC UGGCAUG  UGGAUGCAUGCAUGC    AGCU             GA GAC U               C
     ||| |||||||  |||||||||||||||    ||||             || ||| |
     GUG ACCGUGU  GUCUACGUACGUACG    UCGA             GC ACG U               A
-CUAA   U       AC               --GU    GCAAAAAUUUCCC  -   G ACGUACGUACGUGCU
Stem-loop sequence GAGGACGCUGGCAUGGAUGGAUGCAUGCAUGCAGCUAGCUAGACAGACGACUCCACAAGUCCUCAUGCAUCGUGCAUGCAUGCAUGGCACGCCCUUUAAAAACGAGCUUGGCAUGCAUGCAUCUGCAUGUGCCAUGUGAAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AF435643.1
ncRNA:20   CCGUGUACGUCUACGUACGU   1
  **|||||||||||*||||||
targets:1786   UACACAUGCAGAUACAUGCA   1805

2.5 Oryza sativa CSLA7 mRNA, partial cds NA coding protein psRNATarget
XM_015768790.1
ncRNA:20   CCGUGUACGUCUACGUACGU   1
  *|||*|||||*|||||||||
targets:712   UGCAAAUGCAUAUGCAUGCA   731

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4330788 (LOC4330788), mRNA uncharacterized LOC4330788(LOC4330788) coding protein psRNATarget
AK111266.1
ncRNA:20   CCGUGUACGUCUACGUACGU   1
  *|||*|||||*|||||||||
targets:648   UGCAAAUGCAUAUGCAUGCA   667

2.5 Oryza sativa Japonica Group cDNA clone:002-180-F07, full insert sequence NA coding protein psRNATarget
XM_015760341.1
ncRNA:20   CCGUGUACGUCUACGUACGU   1
  *|||||*|*|||||||||||
targets:328   UGCACACGGAGAUGCAUGCA   347

2.5 PREDICTED: Oryza sativa Japonica Group probable transcriptional regulator RABBIT EARS (LOC9271775), mRNA probable transcriptional regulator RABBIT EARS(LOC9271775) coding protein psRNATarget