Search result

BaseInfo

ncRNA ID	ath-miRf10165-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	22
Mature sequence(if miRNA)	NA - UACUCGACCUUGGGGUCGAGUG - NA
Stem-loop(if miRNA)	C    A      -U  GA     UGAUGA   GGUAAUGGAGGUGAAGACACUCGACCUCGGGGUCGAGUGAAGUGAACGAGUGAUUGUUAGGUGGUAGAGGUG UACUCGACUUC AGGU GAGUGG  GU  UCGAG      UCA                                                                        A ||||||||||| |||| ||||||  ||  |||||      |||                                                                        A GUGAGCUGGGG UCCA CUCAUC  CG  AGUUC      UUU                                                                        G            U    G      UU  -A     UGGAAG   CUGGUGAGCUGGGGGUCCAGCUCAUCCCCUGAAGAGCUAAAGUAGAGUAGUGAGCAGGGGGACCAGCUCACA
Stem-loop sequence	UACUCGACUUCCAGGUAGAGUGGUGUGAUCGAGUGAUGAUCAGGUAAUGGAGGUGAAGACACUCGACCUCGGGGUCGAGUGAAGUGAACGAGUGAUUGUUAGGUGGUAGAGGUGAAGACACUCGACCAGGGGGACGAGUGAUGAGAUGAAAUCGAGAAGUCCCCUACUCGACCUGGGGGUCGAGUGGUCUUUGAAGGUCUUGAAGCUUCUACUCGACCUUGGGGUCGAGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY231407.1	ncRNA:22   GUGAGCUGGGGUUCCAGCUCAU   1   ||||||||||||*||||||||| targets:536   CACUCGACCCCAUGGUCGAGUA   557 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:22   GUGAGCUGGGGUUCCAGCUCAU   1   |||||||||||*|||||||||| targets:1105   CACUCGACCCCCAGGUCGAGUA   1126 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
BT025674.1	ncRNA:22   GUGAGCUGGGGUUCCAGCUCAU   1   =||||||||||*|||||||||| targets:188   UACUCGACCCCCAGGUCGAGUA   209 Target Full Sequence	1.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
AY227642.1	ncRNA:22   GUGAGCUGGGGUUCCAGCUCAU   1   |||||||||||=|||||||||= targets:855   CACUCGACCCCGAGGUCGAGUG   876 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
EF183042.1	ncRNA:22   GUGAGCUGGGGUUCCAGCUCAU   1   |||||||||||=|||||||||= targets:1618   CACUCGACCCCGAGGUCGAGUG   1639 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:22   GUGAGCUGGGGUUCCAGCUCAU   1   =||||||||||*|||||||||= targets:137   UACUCGACCCCCAGGUCGAGUG   158 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:22   GUGAGCUGGGGUUCCAGCUCAU   1   =||||||||||*|||||||||= targets:137   UACUCGACCCCCAGGUCGAGUG   158 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:22   GUGAGCUGGGGUUCCAGCUCAU   1   |||||*|||*|||||||||||| targets:45   CACUCAACCACAAGGUCGAGUA   66 Target Full Sequence	2.5	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget