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BaseInfo

ncRNA ID novel_tse_miR44
Species Triadica sebifera
Class miRNA
Genome position NA
Reference genome NA
Source Predicted
Length 21
Mature sequence(if miRNA) 1 - CAGCACAAACAGUAUAGCUUC - 21
Stem-loop(if miRNA) --                                             C  A                                                                                                                                                                                                                                                                                                                                                                     AC   --------UC    U - G       G
  CAGCACAAACAGUAUAGCUUCUAUCUUUGCUUGGUCGAGAGGUCU GC CACAGGGCCAAGUUGGAUGAUAAUGCUAGACUCUUGGAUUUCACCCAGAAGCUUGAAGCAGCUUGUAUUGGUGCUGUGGAGUCUGGCAAGAUGACUAAGGAUCUUGCAUUGAUUAUUCAUGGACCUAAGGUUACUCGAGAACAGUAUCUCAACACUGAGGAGUUCAUUGAUGCUGUGGCAGCAGAGCUGUCAGCAAGACUUGGUAUCAAAGCAUAAGCGUAUGUCCAUACUUUCUAAGUUGGCACUAGAAUGAUAUGAAUGCUACAAUUGUAUCAGUGUUCUUGAUGAUAUUUUCUUUUCUUGUUUUCUUUCCUUAUUGAAACACUGAAACUUAUAUGGAUGACUUCUUUUGGCAUU  ACA          UACA C U UGGAAGU C
  ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||          |||| | | ||||||| U
  GUCGUGUUUGUCAUAUCGAAGAUAGAAACGAACCAGCUCUCCAGA CG GUGUCCCGGUUCAACCUACUAUUACGAUCUGAGAACCUAAAGUGGGUCUUCGAACUUCGUCGAACAUAACCACGACACCUCAGACCGUUCUACUGAUUCCUAGAACGUAACUAAUAAGUACCUGGAUUCCAAUGAGCUCUUGUCAUAGAGUUGUGACUCCUCAAGUAACUACGACACCGUCGUCUCGACAGUCGUUCUGAACCAUAGUUUCGUAUUCGCAUACAGGUAUGAAAGAUUCAACCGUGAUCUUACUAUACUUACGAUGUUAACAUAGUCACAAGAACUACUAUAAAAGAAAAGAACAAAAGAAAGGAAUAACUUUGUGACUUUGAAUAUACCUACUGAAGAAAACCGUAA  UGU          AUGU G A ACCUUUA G
UG                                             A  A                                                                                                                                                                                                                                                                                                                                                                     GU   CCCUUAUAAU    C U G       A
Stem-loop sequence CAGCACAAACAGUAUAGCUUCUAUCUUUGCUUGGUCGAGAGGUCUCGCACACAGGGCCAAGUUGGAUGAUAAUGCUAGACUCUUGGAUUUCACCCAGAAGCUUGAAGCAGCUUGUAUUGGUGCUGUGGAGUCUGGCAAGAUGACUAAGGAUCUUGCAUUGAUUAUUCAUGGACCUAAGGUUACUCGAGAACAGUAUCUCAACACUGAGGAGUUCAUUGAUGCUGUGGCAGCAGAGCUGUCAGCAAGACUUGGUAUCAAAGCAUAAGCGUAUGUCCAUACUUUCUAAGUUGGCACUAGAAUGAUAUGAAUGCUACAAUUGUAUCAGUGUUCUUGAUGAUAUUUUCUUUUCUUGUUUUCUUUCCUUAUUGAAACACUGAAACUUAUAUGGAUGACUUCUUUUGGCAUUACACAUCUACAUCUGUGGAAGUGCUGAAUUUCCAGAUGCUGUAUAAUAUUCCCUGUUGAAUGCCAAAAGAAGUCAUCCAUAUAAGUUUCAGUGUUUCAAUAAGGAAAGAAAACAAGAAAAGAAAAUAUCAUCAAGAACACUGAUACAAUUGUAGCAUUCAUAUCAUUCUAGUGCCAACUUAGAAAGUAUGGACAUACGCUUAUGCUUUGAUACCAAGUCUUGCUGACAGCUCUGCUGCCACAGCAUCAAUGAACUCCUCAGUGUUGAGAUACUGUUCUCGAGUAACCUUAGGUCCAUGAAUAAUCAAUGCAAGAUCCUUAGUCAUCUUGCCAGACUCCACAGCACCAAUACAAGCUGCUUCAAGCUUCUGGGUGAAAUCCAAGAGUCUAGCAUUAUCAUCCAACUUGGCCCUGUGAGCAAGACCUCUCGACCAAGCAAAGAUAGAAGCUAUACUGUUUGUGCUGGU