ncRNA ID | novel_tse_miR44 |
Species | Triadica sebifera |
Class | miRNA |
Genome position | NA |
Reference genome | NA |
Source | Predicted |
Length | 21 |
Mature sequence(if miRNA) | 1 - CAGCACAAACAGUAUAGCUUC - 21 |
Stem-loop(if miRNA) |
--                                             C  A                                                                                                                                                                                                                                                                                                                                                                     AC   --------UC    U - G       G   CAGCACAAACAGUAUAGCUUCUAUCUUUGCUUGGUCGAGAGGUCU GC CACAGGGCCAAGUUGGAUGAUAAUGCUAGACUCUUGGAUUUCACCCAGAAGCUUGAAGCAGCUUGUAUUGGUGCUGUGGAGUCUGGCAAGAUGACUAAGGAUCUUGCAUUGAUUAUUCAUGGACCUAAGGUUACUCGAGAACAGUAUCUCAACACUGAGGAGUUCAUUGAUGCUGUGGCAGCAGAGCUGUCAGCAAGACUUGGUAUCAAAGCAUAAGCGUAUGUCCAUACUUUCUAAGUUGGCACUAGAAUGAUAUGAAUGCUACAAUUGUAUCAGUGUUCUUGAUGAUAUUUUCUUUUCUUGUUUUCUUUCCUUAUUGAAACACUGAAACUUAUAUGGAUGACUUCUUUUGGCAUU  ACA          UACA C U UGGAAGU C   ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||          |||| | | ||||||| U   GUCGUGUUUGUCAUAUCGAAGAUAGAAACGAACCAGCUCUCCAGA CG GUGUCCCGGUUCAACCUACUAUUACGAUCUGAGAACCUAAAGUGGGUCUUCGAACUUCGUCGAACAUAACCACGACACCUCAGACCGUUCUACUGAUUCCUAGAACGUAACUAAUAAGUACCUGGAUUCCAAUGAGCUCUUGUCAUAGAGUUGUGACUCCUCAAGUAACUACGACACCGUCGUCUCGACAGUCGUUCUGAACCAUAGUUUCGUAUUCGCAUACAGGUAUGAAAGAUUCAACCGUGAUCUUACUAUACUUACGAUGUUAACAUAGUCACAAGAACUACUAUAAAAGAAAAGAACAAAAGAAAGGAAUAACUUUGUGACUUUGAAUAUACCUACUGAAGAAAACCGUAA  UGU          AUGU G A ACCUUUA G UG                                             A  A                                                                                                                                                                                                                                                                                                                                                                     GU   CCCUUAUAAU    C U G       A |
Stem-loop sequence | CAGCACAAACAGUAUAGCUUCUAUCUUUGCUUGGUCGAGAGGUCUCGCACACAGGGCCAAGUUGGAUGAUAAUGCUAGACUCUUGGAUUUCACCCAGAAGCUUGAAGCAGCUUGUAUUGGUGCUGUGGAGUCUGGCAAGAUGACUAAGGAUCUUGCAUUGAUUAUUCAUGGACCUAAGGUUACUCGAGAACAGUAUCUCAACACUGAGGAGUUCAUUGAUGCUGUGGCAGCAGAGCUGUCAGCAAGACUUGGUAUCAAAGCAUAAGCGUAUGUCCAUACUUUCUAAGUUGGCACUAGAAUGAUAUGAAUGCUACAAUUGUAUCAGUGUUCUUGAUGAUAUUUUCUUUUCUUGUUUUCUUUCCUUAUUGAAACACUGAAACUUAUAUGGAUGACUUCUUUUGGCAUUACACAUCUACAUCUGUGGAAGUGCUGAAUUUCCAGAUGCUGUAUAAUAUUCCCUGUUGAAUGCCAAAAGAAGUCAUCCAUAUAAGUUUCAGUGUUUCAAUAAGGAAAGAAAACAAGAAAAGAAAAUAUCAUCAAGAACACUGAUACAAUUGUAGCAUUCAUAUCAUUCUAGUGCCAACUUAGAAAGUAUGGACAUACGCUUAUGCUUUGAUACCAAGUCUUGCUGACAGCUCUGCUGCCACAGCAUCAAUGAACUCCUCAGUGUUGAGAUACUGUUCUCGAGUAACCUUAGGUCCAUGAAUAAUCAAUGCAAGAUCCUUAGUCAUCUUGCCAGACUCCACAGCACCAAUACAAGCUGCUUCAAGCUUCUGGGUGAAAUCCAAGAGUCUAGCAUUAUCAUCCAACUUGGCCCUGUGAGCAAGACCUCUCGACCAAGCAAAGAUAGAAGCUAUACUGUUUGUGCUGGU |